Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00456 ATTTGGTTGGTTGATGTGAGCCCCACTCCTGTGCCTGCTTGTCTATCGTCGACCAGTGCACCCTCACCGTCTCCGATAAGTCGGTATTTTGCAACTGCTCCACATCGGTTTTCCGGCGTCTTTAAACAATTACGAGAAGTCTCGTCGGACGGTCACGCTGCACTTGTAAGGTTTAGGGTTTTGGCTGACTTTCAATTTGAGGATTTTGTTCATTGTTGTTTCTACAGGCTTCTCTTACTTTTTCGGTTCTTTTCATGCGATTTCATTACGGGCTCTATAATGATTGAGATCAAAGAGAAGCCAAAGAAAGGAACAATCAGTAACGAAGATAGTTCCGCCGTATTGGAAAGATATTCAGTAAGGACGATATTTACTTTGCTTCGGGAGGTGGCTCATGTTTCGGAAGTGAGAATTGATTGGGACAAGTTGGTGAAGAACACGTCAACTGGGATTTCTAATGTTCGGGAGTATCAGTTGTTATGGCGGCACTTGGCTTATCGTCATACGTTACTGGAAAACGTGGATTCTGTTACTGATCCATTGGATTATGACAGTGACTTGGATTTTGAAATAGAACCTTTTCCATCTGTTAGCAATGAGTCCTTGAATGAAGCTGCCGCATGTGTGAAGGTATTGATTGCTAATGGTATACCAAGTGAGTCAGATGTTCCAAGTAGTTCTGTAGTTGAGGCCCCATTGACTATCGGTATATCATCGAACAGTCGACCATTTAGAGCCAGTCTTGAAAATCCTCAATCTGCTTGTTTGATGCAAGGAATGTATGTTACCTTTCCTATTTCGGTTCAGAGACAGCCTCTTCCAACACCATCAGCAACTGAAGTATTTGACGTGAATGGAGCAGCTGGTGGCAATGCAGCTTCTCGAAAAAGAAGAAAACCTTGGTCGAAGACGGAGGATTTGGAATTGATGGCTGCTGTGGAGAAGTATGGTGAAGGGAACTGGGCAAATATCTTGAAAGCAGACTTCAAGGGGGATAGGACTGCGTCACAGCTATCTCAGAGGTGGTCCATTATTCGGAAGCGACGTGGTAAGTTGAGTGTGGGAGCTAACACCACAAGTACTCAGACATCTAAAGCTCAGATTGATGCTGCACACCGCGCATTGTCCCTTGCCCTTGATTTGCCTGTGAATAACTCAAAATCAGCAAATTCAAACATGAATAGTAGCACTGTCTCTTCTACAAGTGGTGCCGAAGCTCCGGTTCAAATACAGAATCAGTCTCCACAGGTTCTCGTGCCTTTACGGCCTCTGCAGGTGAAGCCTTTACCTTCAGCAGCGAAATCAGGAATCAACACTGCCAAGAATACGTTGATGATGAAGTCTACTCACAATTCTGATTCTATAGTTAGAGCCACTGCTGTAGCTGCAGGGGCCCGGATTGTTTCTCCATCCGATGCTGCGTCTCTAATGAAAGCTGCACAGACTAAAAATGCCATCCACATAAAATCCAAATGTGTTTCTTCAATCCAGCCACCCGTGCTTGGTAATGCATCGACGCACTTGGATGCACGGCCCAGTGTACATTATATTTCTACCGGAAGAACAGCAACTCCAGGCTCAAACTACGTCGGTGGTAAATCTACTATGGCTGGTAAATACTCGATGAAGTATGTCTCCCCAAAAGCTCCGTATAATTGTTCTACTGCTGTTTCGACAAACCCACCATCAAATCAAATAAGCCCAACAACTGAGTCTCCATTGAAGCAAGAGGTTAAGAGTTCAGAAGAATGCAAAATTTCCAAGCCAATCATTACTTCGAAAGACGATTTTCGAGAAAATAGAACTGTCGTAAGAGATGTCTTTGCTTCACAAATATCAGATTGGGAATCGGGAAGTCGTTCAACTTGCATTGAGAATCAAAATACTTCTTTGAATATGGAGATAGATGAAAATGATATTAAAGCGGCATGCCCCAAGCAGGACGAAAATAAAACGAAGGCAAATGATGTCAAGATTAGGGGGTGA 1986 43.76 IWLVDVSPTPVPACLSSTSAPSPSPISRYFATAPHRFSGVFKQLREVSSDGHAALVRFRVLADFQFEDFVHCCFYRLLLLFRFFSCDFITGSIMIEIKEKPKKGTISNEDSSAVLERYSVRTIFTLLREVAHVSEVRIDWDKLVKNTSTGISNVREYQLLWRHLAYRHTLLENVDSVTDPLDYDSDLDFEIEPFPSVSNESLNEAAACVKVLIANGIPSESDVPSSSVVEAPLTIGISSNSRPFRASLENPQSACLMQGMYVTFPISVQRQPLPTPSATEVFDVNGAAGGNAASRKRRKPWSKTEDLELMAAVEKYGEGNWANILKADFKGDRTASQLSQRWSIIRKRRGKLSVGANTTSTQTSKAQIDAAHRALSLALDLPVNNSKSANSNMNSSTVSSTSGAEAPVQIQNQSPQVLVPLRPLQVKPLPSAAKSGINTAKNTLMMKSTHNSDSIVRATAVAAGARIVSPSDAASLMKAAQTKNAIHIKSKCVSSIQPPVLGNASTHLDARPSVHYISTGRTATPGSNYVGGKSTMAGKYSMKYVSPKAPYNCSTAVSTNPPSNQISPTTESPLKQEVKSSEECKISKPIITSKDDFRENRTVVRDVFASQISDWESGSRSTCIENQNTSLNMEIDENDIKAACPKQDENKTKANDVKIRG 661
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2653422 2661043 - Cp4.1LG06g04040.1 Cpe06g00456 471236

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00456 661 SMART sant 297 348 IPR001005 -
Cpe06g00456 661 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 293 350 IPR017930 -
Cpe06g00456 661 MobiDBLite consensus disorder prediction 556 575 - -
Cpe06g00456 661 ProSiteProfiles Myb-like domain profile. 293 346 IPR001005 -
Cpe06g00456 661 SUPERFAMILY Homeodomain-like 295 347 IPR009057 -
Cpe06g00456 661 MobiDBLite consensus disorder prediction 556 577 - -
Cpe06g00456 661 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 94 656 - -
Cpe06g00456 661 Pfam Myb-like DNA-binding domain 298 342 IPR001005 -
Cpe06g00456 661 CDD SANT_TRF 299 347 - -
Cpe06g00456 661 Gene3D - 291 350 - -
Cpe06g00456 661 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 94 656 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00456 - - - mcha:111008703 759.985
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe06g00456 Cpe07g00173 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00456 Cpe-Chr6:2653422 Cpe11g00475 Cpe-Chr11:2727115 1.86E-123 dispersed
Cpe06g00456 Cpe-Chr6:2653422 Cpe07g00173 Cpe-Chr7:1036067 1.09E-121 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g521 . . Bda01g00909 . . . . . . Cmo12g00157 . Cma09g00595 . Car12g00185 Sed04g0197 Cpe06g00456 Cpe07g00173 Bhi04g01388 Tan02g2476 Cmetu03g1900 . Hepe10g0434 . Lcy13g1484 . . . . . . . Cone4ag1295 Cone7ag0860 . . . . Chy04g00204 . . . . . Bpe02g01148 Bpe14g00483 . . Sed13g1535 . Cmo09g00581 Cma12g00203 . . Car09g00526 . . Bhi09g02501 Tan01g3854 . . . Mch11g0711 . Cla11g01427 Cam11g1483 Cec11g1513 Cco11g1509 Clacu11g1644 Cmu11g1462 Cre11g1880 . . . Cme04g00235
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013829 0 2 0 0 0 0 1 1 0 1 0 1 1 1 1 1 1 0 1 1 1 1 1 1 1 0 1 3 1 0 23
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49657 PF00249 Myb_DNA-binding 1.50E-07 CL0123 Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00456 Cpe_Chr06 FPKM 75.054359 94.8283 29.677856 29.052414 140.584244 130.870972 141.253586 10.190065 12.729109 10.832654