Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe06g00459 | ATGGCGATAGCAGATAACAGAAAGAGATGGATGCCACTCCCTGAGGATAGAGTAGGCCGCAGAGGCAAAACCTTGGATTTTCCTGAAGCTGTATTACTAGTCCATCCTAGAGAAGCTGCGTTCAAGGGAGAGGTGGACGATAAGTACCAATATTCTTGTGAAAATAAGGATCTTAAAGTGCATGGATGGATATCCATGGATCCTTCCGACGACCCTCCGATGTTTCTTAGCGCTCACTATGGAGGAGAGGAGTTGGTGCTGAAGCTGAATCCTGATGAGCCGTGGAAGAAAGTGTTTGGGCCTGTCTTTTTCTATCTTAATTCTGTTCCTAATGGAACTGATCCACTTTCTTTGTGGGAAGATGCTAAAATTCAGCAAGAGCAAATGCCGGCAGCTGAGGCATATGTGGGACTGGCAGCGCCGGGAGACGCTGGATCATGGCAGACCGAAACCAAGGGCTACCAATTTTGGACCAAAACAGATGCATATGGCTCGTTTAGCATCGAAAATGTACGCATCGGCGACTACAATCTTTATGCTTGGGTTCCTGGCTTCATTGGTGACTACCGTTACGACGTTGTCATTAGCGTCTCTGCAGGTAGTGATATGGACGTGGGGGATTTTGTTTTTGAGCCGCCTAGGAATGGTCCAACGCTATGGGAAATAGGCATTCCTGATCGCTCTGCAGCTGAATTCTATATTCCTGATCCTAACCCAAATTACATTAACAAATTATACGTCGACCATCCAGATAGATTCAGGCAATATGGACTGTGGGAGAGATATGCAGAATTATATCCTGATACAGACTTAGTATATACCGTTGGAGTTAGTGATTACACAAAAGATTGGTTCTTCGCTCATGTTAATCGGACCAGAAATGATGGGTCCCATTTACCAACCACGTGGCAAATCAAGTTTACACTCGATAACAACATAGATAAGAGCGGTATCTATAAATTGCGAGTGGCTTTGGCCACCGCCAATGTTGCTGAATTACAGATTCGGGTGAACAATCCAGAAGTAGAGTCGGCTCTATTTACGACAGGACAAATTGGGCACGATAATGCAATTGCAAGACATGGAATTCATGGACTCTATCGACTCTATAGTGTCGACATATCGGGATCTGTACTGGTGGAAGGAGAGAACACCATCTTGCTTTCACAAATTATAAACAATTCATCTTTCAACGGCGTCATGTACGATTATATCCGCCTCGAAGGCCCCCCATCCGACGTCTCTACACATCCATAA | 1257 | 45.03 | MAIADNRKRWMPLPEDRVGRRGKTLDFPEAVLLVHPREAAFKGEVDDKYQYSCENKDLKVHGWISMDPSDDPPMFLSAHYGGEELVLKLNPDEPWKKVFGPVFFYLNSVPNGTDPLSLWEDAKIQQEQMPAAEAYVGLAAPGDAGSWQTETKGYQFWTKTDAYGSFSIENVRIGDYNLYAWVPGFIGDYRYDVVISVSAGSDMDVGDFVFEPPRNGPTLWEIGIPDRSAAEFYIPDPNPNYINKLYVDHPDRFRQYGLWERYAELYPDTDLVYTVGVSDYTKDWFFAHVNRTRNDGSHLPTTWQIKFTLDNNIDKSGIYKLRVALATANVAELQIRVNNPEVESALFTTGQIGHDNAIARHGIHGLYRLYSVDISGSVLVEGENTILLSQIINNSSFNGVMYDYIRLEGPPSDVSTHP | 418 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 2689080 | 2692870 | - | Cp4.1LG06g04070.1 | Cpe06g00459 | 471239 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe06g00459 | 418 | CDD | RGL4_C | 220 | 408 | - | - | |
| Cpe06g00459 | 418 | PANTHER | RHAMNOGALACTURONATE LYASE B-RELATED | 1 | 69 | - | - | |
| Cpe06g00459 | 418 | Pfam | Rhamnogalacturonate lyase family | 1 | 45 | IPR010325 | - | |
| Cpe06g00459 | 418 | SUPERFAMILY | Galactose-binding domain-like | 215 | 408 | IPR008979 | - | |
| Cpe06g00459 | 418 | PANTHER | RHAMNOGALACTURONATE LYASE B-RELATED | 124 | 415 | - | - | |
| Cpe06g00459 | 418 | PANTHER | RHAMNOGALACTURONATE LYASE B-RELATED | 74 | 126 | - | - | |
| Cpe06g00459 | 418 | SUPERFAMILY | Starch-binding domain-like | 149 | 203 | IPR013784 | GO:0030246 | |
| Cpe06g00459 | 418 | Gene3D | - | 216 | 408 | - | - | |
| Cpe06g00459 | 418 | Pfam | Polysaccharide lyase family 4, domain III | 218 | 407 | IPR029411 | - | |
| Cpe06g00459 | 418 | PANTHER | RHAMNOGALACTURONATE LYASE FAMILY PROTEIN | 1 | 69 | - | - | |
| Cpe06g00459 | 418 | PANTHER | RHAMNOGALACTURONATE LYASE FAMILY PROTEIN | 74 | 126 | - | - | |
| Cpe06g00459 | 418 | Pfam | Polysaccharide lyase family 4, domain II | 133 | 203 | IPR029413 | - | |
| Cpe06g00459 | 418 | Gene3D | - | 128 | 205 | - | - | |
| Cpe06g00459 | 418 | PANTHER | RHAMNOGALACTURONATE LYASE FAMILY PROTEIN | 124 | 415 | - | - | |
| Cpe06g00459 | 418 | CDD | RGL4_M | 126 | 207 | IPR029413 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cpe02g00484 | Cpe06g00459 | CCT | |
| Cpe06g00459 | Cpe07g00181 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe06g00459 | Cpe-Chr6:2689080 | Cpe19g00728 | Cpe-Chr19:5660815 | 1.45E-145 | dispersed | |
| Cpe10g00529 | Cpe-Chr10:3101888 | Cpe06g00459 | Cpe-Chr6:2689080 | 4.57E-125 | wgd | |
| Cpe02g00484 | Cpe-Chr2:2771306 | Cpe06g00459 | Cpe-Chr6:2689080 | 2.37E-171 | wgd | |
| Cpe06g00459 | Cpe-Chr6:2689080 | Cpe07g00181 | Cpe-Chr7:1116332 | 7.91E-167 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe06g00459 | K18195 | - | csv:101204193 | 707.983 |