Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00466 ATGGACGCTTCAGCGGGTCGAAGTTTGTATCCTTCTCACCGTACTAAAACTATTCATCTGGTGAGGCATACCCAGGGATTTCATAATGTGGCAGGGGACATGAACGAATATCCATCTCTTGATTACTTTGATGCTCAAGTTACCTCTTTAGGATGGAAACAGGTATCCCATCTTCAAAATGATTATGCGTTTTTCAGAAACTGGTTTAGAGATAAGTTATGGGGGACTATGCAAACAGCGGTTGGAGCTTTTGGTGGTGACGTTTGCCCGGATGGCATAAATGTTCCTCCATTGATGGTGGCGAATGCAGGAAATAGCAACTGCCCTGCAATTTCAAGTTTGAATTGCCCGCCATTTTTGGCAGTTGAGCTTTGTCGGGAACACTTGGGGGAATATCTTATCCCATTTGCTGTTTACTATATGAGGTTCCTGTTGTATCCAGGGGGAAGCCATGAGAATTGGAATGACCATAACAGGTTCTCTTCTGCGGGAAATTATTTGGATGTTAATGCTTTCCATTTGATAAACGTTGATGTGGCGCTTGTTGCAGCTTCCTATAGGCTTTGGACCCGGAAGGAGAAGGAGATTGCAATTGTCAGCCACTGTGGATTCTTATTTCATGTGTTGAGTGTGTTTGGGAACGACTGTCATCGTTCTATAGAGGATGAAATCTGCAAACAGTTTGCCAACTGTGAGCTTCGTTCGTTTGTTCTTGTTGATTGGAGCATGATCGGGTCAGAATCCTCACCGAGGACAACGACGACGAGGAGGACGACAACGAGGACGACGACGACGACGGCCAATTGCCCGAGACGATTACCTACGAAAGGAATCGATCTTCCCAGTGATGTTGCAGTCGAAAAACAGCATCCAGGAAGGGAGTTACAGATGAAGATAGGTGCAGTAGCAGCAACCAATGCCATGGCGCCCGTTCGCCAAGTTCCAAAGCTCTCAGAAATTTATGCGAATTCCAATGCCAATTTTAGAACCTCTCTCGTTTCGGTTCCATTGGGACGGCTCAATCCACGCGCTCCTGTTGGTGCGCGGCCTTTAACAACTCTGTTTCGGTTGCCTCTAAACGTGTCAAATCAATTTGCTTCTGCAACACGACTCTTTTCGCCTCCTCCTCCTCTGAGAGCAGCCTCGTCGCGACCTTCTTCCTCTGTTGTTTGTTCTTTTTCCCGCTTTTCAGAAATGGACGCTTCAGGGGGGATAAGTTTGTATCCATCTCACCGTACTAAAACTATTCATCTGGTGAGGCATGCCCAGGGATTTCATAATGTGGCAGGAGAGAAGGACGCGAACGAATATCTATCTTTTGATTACTTTGATGCTCAACTTACATCTCTTGGATGGAAACAGGTTGCCAATCTGCGGAAACATGTACAATCATGTGGACTTGATAAGAGAATTGAGTTAGTCATTGTGTCCCCCTTGTTCAGGACTATCCAAACCGCGGTTGGAGCATTTGGTGGTGAAGGTTACTCGGATGGTATAAATGTTCCTCCGTTAATGGTATCAAATGCAGGAGATTGCAACCGCCCTGCAATTTCAAGTTTGAATTGCCCGCCATTTTTGGCAGTAGAGCTTTGTCGGGAACATTTGGGTGTTCACCCATGTGACAAGAGGCGAAGCATTAAAGAGTATCGGTCTCTTTTCCCTGCGATTGATTTTTCAATGGCAAGTTGCATTGTTTTGTCCATTGAACATGATGAAGATAAACTGTGGAGCCCAGACATTAGAGAGACCAACGATGAAGTGGCAGATAGGGGATTGAAGTTTCTTAAATGGCTCTGGACCCGGAAGGAGAAGGAGATTGCCGTTGTCAGCCACAGTGGATTCTTATTTCATTCATTGAGTGCATTTGGAAATGACTGCCGTCCACTTGTAAAGGACGAAATCTGCAAACATTTTGCCAACTGTGAGCTTCGTTCCTTTGTTCTAGTTGATAGGAGCATGATTGGGTCAGAATCCTCGATGACCAATTTCCCCGGCGGCTTACCGAAAGGGCTCGATCTTCCCAGTGATGTTGCAGCTGAAATGCAACCGGAGAAGAAGGGAGTTCCCAATGAAGATGTGGCTTGA 2085 45.95 MDASAGRSLYPSHRTKTIHLVRHTQGFHNVAGDMNEYPSLDYFDAQVTSLGWKQVSHLQNDYAFFRNWFRDKLWGTMQTAVGAFGGDVCPDGINVPPLMVANAGNSNCPAISSLNCPPFLAVELCREHLGEYLIPFAVYYMRFLLYPGGSHENWNDHNRFSSAGNYLDVNAFHLINVDVALVAASYRLWTRKEKEIAIVSHCGFLFHVLSVFGNDCHRSIEDEICKQFANCELRSFVLVDWSMIGSESSPRTTTTRRTTTRTTTTTANCPRRLPTKGIDLPSDVAVEKQHPGRELQMKIGAVAATNAMAPVRQVPKLSEIYANSNANFRTSLVSVPLGRLNPRAPVGARPLTTLFRLPLNVSNQFASATRLFSPPPPLRAASSRPSSSVVCSFSRFSEMDASGGISLYPSHRTKTIHLVRHAQGFHNVAGEKDANEYLSFDYFDAQLTSLGWKQVANLRKHVQSCGLDKRIELVIVSPLFRTIQTAVGAFGGEGYSDGINVPPLMVSNAGDCNRPAISSLNCPPFLAVELCREHLGVHPCDKRRSIKEYRSLFPAIDFSMASCIVLSIEHDEDKLWSPDIRETNDEVADRGLKFLKWLWTRKEKEIAVVSHSGFLFHSLSAFGNDCRPLVKDEICKHFANCELRSFVLVDRSMIGSESSMTNFPGGLPKGLDLPSDVAAEMQPEKKGVPNEDVA 694
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2727331 2744077 - Cp4.1LG06g03920.1 Cpe06g00466 471246

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00466 694 SUPERFAMILY Phosphoglycerate mutase-like 16 240 IPR029033 -
Cpe06g00466 694 PANTHER BROAD-SPECIFICITY PHOSPHATASE YOR283W-RELATED 188 250 - -
Cpe06g00466 694 PANTHER BROAD-SPECIFICITY PHOSPHATASE YOR283W-RELATED 399 683 - -
Cpe06g00466 694 PANTHER BROAD-SPECIFICITY PHOSPHATASE YOR283W-RELATED 1 132 - -
Cpe06g00466 694 MobiDBLite consensus disorder prediction 248 267 - -
Cpe06g00466 694 PANTHER PHOSPHOGLYCERATE MUTASE-LIKE PROTEIN 1 1 132 - -
Cpe06g00466 694 PANTHER PHOSPHOGLYCERATE MUTASE-LIKE PROTEIN 1 399 683 - -
Cpe06g00466 694 PANTHER PHOSPHOGLYCERATE MUTASE-LIKE PROTEIN 1 188 250 - -
Cpe06g00466 694 Gene3D - 408 667 IPR029033 -
Cpe06g00466 694 SUPERFAMILY Phosphoglycerate mutase-like 413 650 IPR029033 -
Cpe06g00466 694 SMART PGAM_5 415 618 IPR013078 -
Cpe06g00466 694 MobiDBLite consensus disorder prediction 665 694 - -
Cpe06g00466 694 CDD HP_PGM_like 415 486 IPR013078 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00466 - - - csv:101202826 549.28
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00375 Cpe-Chr1:2156255 Cpe06g00466 Cpe-Chr6:2727331 6.13E-59 dispersed
Cpe06g00466 Cpe-Chr6:2727331 Cpe14g00240 Cpe-Chr14:1392481 7.34E-72 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g558 . . . . Bpe02g00151 . . Bma01g02575 . . . Cma09g00605 . . . Cpe06g00466 . . . . . . . . . . . . . . . Cone4ag1277 Cone7ag0874 . . Lsi04g02298 Csa03g04517 Chy04g00186 . . . Bda11g00812 . . Bpe05g00448 . . Sed05g1536 . Cmo09g00593 . . . Car09g00537 . . Bhi09g02533 Tan01g3880 Cmetu04g2852 . Hepe01g2188 Mch11g0734 . Cla11g01447 Cam11g1500 Cec11g1537 Cco11g1533 Clacu11g1664 Cmu11g1480 Cre11g1900 . . . Cme04g00216
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000410 2 5 1 2 2 0 4 4 2 4 2 4 4 4 4 4 4 4 3 4 4 3 3 3 3 2 5 16 9 2 113
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00466 Cpe_Chr06 FPKM 11.461133 14.253855 11.265115 13.727099 15.095404 12.734441 12.708888 19.365572 17.866423 21.954321