Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00467 ATGGAGCTCAATGAACACTACTTGTTTGAAGAACTCTTAGCTTTCAAAAGAGAAATCAATTGGGAATTTGCAATGCCCACGGACATTAATGCCTGGAATTTTGATTGCTCTGATTCTATGCCAATGGATGAGCTGAACCTTAGTTACCTTCTTAATGGCCAAGGTCAGTATTCTTTTCCCGCCGATCAGTTTACGGCGGCGGCGGCGGCGGCGGCGGCGAGTACTGGCGATTCGATGAGTTTTGAGGTTTATAATGGGGAATATCCGATTATGAATATGGAAGAGGAGGAGCTTGGAATTCTGGAGGATGAAATTCATAATCTTGAAGTTCAGGCCAATTGTAAAGTGGAAGCTGTTCAATCTCCTGAAGAAATCGTTCCCAACGCCGGCGATTTTGGGCCAAAAGTCGTGAATTCCAATCGGAAGAAGCTTCAGGGGCAGCCGTCGAAGAATCTCATGGCGGAGAGACGGCGGAGGAAGCGCCTCAATGATCGCCTCTCCATGCTCCGATCCATTGTCCCCAAAATCAGCAAGATGGATCGAACTGCGATTCTCGCGGACGCGATTGAGTACGTGAAGGAACTGGTGGAGAAAATCAAGAATTTGCAGAGGGAAATTGAAGCGGGGAATGATCCGAATAAGTTGGGGATTTTGAGAGATTTAAAAAGGAATGAATATTTGGTGAGAAATTCGGCTAAGTTTAATGTGGAGAGGCGAGCGGGGGAGACTGGGATAGAGATTTGCTGTGCGGCCAAGCCAGGGCTGTTGCTGTCCACTGTCCAAACCCTCGAAGCGTTGGGGCTTGATATTCAGCACTGTGTCATTAGCTGCTTCAATGACTTCGCCATCCAAGCTTCTTGTTCTGANGTAGCTAAATAA 879 47.1 MELNEHYLFEELLAFKREINWEFAMPTDINAWNFDCSDSMPMDELNLSYLLNGQGQYSFPADQFTAAAAAAAASTGDSMSFEVYNGEYPIMNMEEEELGILEDEIHNLEVQANCKVEAVQSPEEIVPNAGDFGPKVVNSNRKKLQGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTAILADAIEYVKELVEKIKNLQREIEAGNDPNKLGILRDLKRNEYLVRNSAKFNVERRAGETGIEICCAAKPGLLLSTVQTLEALGLDIQHCVISCFNDFAIQASCSXVAK 292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2750571 2751722 + Cp4.1LG06g03960.1 Cpe06g00467 471247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00467 292 Coils Coil 91 111 - -
Cpe06g00467 292 SMART finulus 152 201 IPR011598 GO:0046983
Cpe06g00467 292 Pfam Helix-loop-helix DNA-binding domain 152 195 IPR011598 GO:0046983
Cpe06g00467 292 Gene3D - 138 213 IPR036638 GO:0046983
Cpe06g00467 292 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 150 209 IPR036638 GO:0046983
Cpe06g00467 292 CDD ACT_UUR-ACR-like 245 284 - -
Cpe06g00467 292 Coils Coil 185 205 - -
Cpe06g00467 292 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 146 195 IPR011598 GO:0046983
Cpe06g00467 292 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 74 290 - -
Cpe06g00467 292 PANTHER - 74 290 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe02g00490 Cpe06g00467 CCT
Cpe06g00467 Cpe11g00494 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00467 Cpe-Chr6:2750571 Cpe07g00150 Cpe-Chr7:849756 8.72E-21 dispersed
Cpe10g00525 Cpe-Chr10:3080435 Cpe06g00467 Cpe-Chr6:2750571 6.46E-72 wgd
Cpe11g00494 Cpe-Chr11:2865517 Cpe06g00467 Cpe-Chr6:2750571 4.25E-85 wgd
Cpe02g00490 Cpe-Chr2:2842059 Cpe06g00467 Cpe-Chr6:2750571 2.27E-108 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49659 PF00010 HLH 3.80E-10 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00467 - - cmax:111480299 349.362