Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00470 ATGGCAGGAGTTTTTAGAGAAAGAGCACTGTCTCTCCTCGCCGCCGCTAACAACCACGGCGATTTAACGGTGAAGATTTCATCTTTGAAGCAGGTGAAGGATATCATACTAGCCATCGAGCCATCTTTCGCAGCAGAGCTCTACTCCTACTTGGTCGAGCTTCAGTCTTCCCCCGAGAGCTTACTACGTAAATTGTTAATTGAGGTGATTGAAGACATTGGATTGAGAGCCATGGAACATTCTCCTCTGTTAATGTCAGTTTTATTGGCATCTTTAAAGGATGAAGACTCTATTGTAGCAGGACAATCAATTACTAGTGGGCAAAAATTATTTTGTGGTGCTTTAAGAGAGATGACATTGCAGTTGCATCGACGGGGTAAAGTTGAGAGATGGCTTGAAGAACTGTGGATGAGGATACTGAAGTTTAAAGATGAGGTTTTGGCAATTGCCATAGAGCCTGGTTCTGTCGGGAAGAGGTTGCTGGCTTTGAAATTTTTGGAAACATATGTTCTACTTTTTACATCCGATACAAATGATCCACAAAAAGCTATCTCAGAAGGAAATGGGGATGTTTTTAACATTTCATGGCTTGCTGGTGGGTTTCCGATATTGGATCCAGTTGTGCTAGCGTCGGAAGCTAATAGGATGCTTGGTATTCTGTTGAATTTGTTGCAGACCAGTTCTGTTGCTGGTACATACACAGTAACAATTATCGGTGGAGGCCTCAAAACTTTAGCACATAGCAGTAACCTTTATTTTGTCCTCGTCATTACTATCTTGAAAATTGTGAAGGGACAATTGAAGCCTGGATCAGAAAATGGAGTAGCAATGCTAGATGGTGTTAGACTGCAAAATTGTTTGGGTACTTTGGAGCACCAGTGGCCAGGGATAGGAATGGATAACTGGTGTAATGATTACTTGTGTGAATGGGATGGAAGTTTAGCAGCTATAGCAAGGAAAAGACCAGTTCATTATGGTATCATTCTATCGGCACTGTTGGAATTTGTTCCAAGTTTTGAGATGGTAAAAGGGCGTCATGCTGCCAGTATCCAGTATTCTATAAGATCTGCACTTTTGGGATTCCTAAGGTGTCTGCATCCAGCGTTTGTAGAGCTTGGTTTTCAGTCAAGAGACAGGTTGCTAAAGGCTTTAAGAGCTATGAATGCTGGAGATGCTGCAGATCAGGTAATCAGGCAAGTGGACAAAATGGTGAAGGCTGCAGATCGAGCTTCACGTGATGCTTTGCTGGGCAAGGATGACCAATCATCAAATCAGCATAATGCATCAGTGGATCTTACAAGAAAAAGACCTAGGCTTCTGGACGATGAAGAACTTCCCAATGGCCATGAGGTTTCCAAGCAAGTTCGCTTAGGTCCAGATTTTCACCCAATTTCCACAGTGCGAAAAGATGGTACTCGACAGAGTGCCATCTCTAATGGGACATCCCATGATGTTCCTACATTAGATGTTGAATCGACTCCTGCAGAGCAGATGATTGCAATGATTGGTGCCTTACTAGCTGAAGGGGAGCGAGGTGCAGAATCACTTGAAATTCTGATTTCAAATATTCATCCCGACTTGCTGTCTGATATTGTCATAACTAACATGAAGAACTTGCCCAAAGCCCCCCCTCCAACCACTAGGCATGGGGACTTACCTGTAACTCATCAAGTAAGTAGTCACGGACAAGTTCTGGCACCATCAGCTCCATTGAGTTCTGTGCAAACTTCAGTTTCTACTGCACAAGCTCCTTTTTCTTTGGCCACCTCCGCTGGTTCAACTTATGCTGAGTCTGCTGTCAATAGTCTCCCTGTTGACTCTAAACGCGATCCAAGAAGGGATCCCCGCCGCCTTGATCCTCGCCGTGGAGGAGTATCTTCTGCTTCTAGTGTGGAAGAGGCAATTTCAAATACATCTGATGTTGATGGTTCCATATCTTTGGGAAAATCTGCTTTGGTTCCTGTTTCTACGACAATCGAGAATTCTTCGGTATTTTCTATATCTAAAACAAAAGTTGAAGAAAAAATCATTGAAACTCCATTCCCGATTGGAACAGATCAACCAACCCCCAAATCAAAATCTCCTGATAGAGCTGAGAAAGTTGACTCTATATTAGAGATTGATGCCCCTCTGGATCCCTTTTCTACTGCTGTTGGAAAAGCTGATGATGATTTAGTTGCAGTTAATTTGGTCGATGACTCGGCAACAAAGAGGGATGATACATCGTCTTCTATAGAATACAATCCGTATTCTCCATCAGTTACGAATGCAGCTGCATCTGAAGATACCTGTGAGGAATTGCCTCAGCTTCCTCCATACGTTGACTTGACTCCAGAACAGCAAATAAGTGTAAGAAATTTGGCAGCTGAAAAGATATTTGATTCGTGCAAGAATTTAAATGGGGCAGACTGCCATCAGAAATGCTCGGCAATAATTGCTCGAATGGTTGCTCAGGTTGATGCTGATGATGATATTGTTCGAATGTTGGAAAAACAAGTCGCTAGTGATTACCAACAGCAAAAGGGGCATGAGCTTGCTTTACATGTCTTATATCACCTGCATTCACTCAATATTCTGGATTCAGTGGAAAGTTCTTCTTTTGTTGTGTACGAGAAGTTTCTTCTAGTTGTGGCTAAATCGCTGCTAGATGCTTTTCCAGCTTCAGACAAATCTTTTAGCAGACTTCTTGGTGAAGTTCCAGTTTTTCCGGACTCTACGTTGGAACTATTACATAACCTTTGCTATTGTGATATAACTGACAACCAGGGGAAGGACAGTCCCGATATTGAACGTGTCACGCAAGGTCTTGGCACTGTTTGGAATTTGATTGTGAAACGTCCACATAGTCGGCAAGCTTGCTTAGATATTGCTCTTAAGTGTGCAATGCATTCAGAAGTTAAGGTTCGAGCAACAGCTATTAGACTGGTGGCGAACAAACTCTATCGGTTAAGTTACATTTCAGATAGGATTGAGCAACATGCAACAAACATGTTCCTGTCTGCAGTAGACGGCGTAGATCAGACAGATGTAAAGCCTTTACCATGTGGATCGATCGAGCAAAGCACTGGAGGAGAGGGTGAGAGTCAGGAAACATCCATTTGTGGTTCTCAAGTTTCAGATCCTGGAACCTCAGAAGACAATTCGACGAGGAGTTCACAACCTACAGTACATGCCAGTTCAACCTTGTCACTTTCAGAAGCTGAAAGACATATTTCTCTTCTTTTTGCCCTATGCGTTAAGAAACCTTGTCTGCTTCAAACTGTATTTGATGCTTATGGACGGGCTCCTAAAGCAGCGAAAGAGGCCGTTCATGAACATATCCCTAATCTTATTACGGCCCTAGGCTCATCTAATGCTGAATTGCTTAGAATAATATCAGATCCACCCCCAGGAAGTGAACATCTTTTAGCAATGGTTCTACAGGTACTAACTCAAGAGACAACGCCTTCTTCGGATCTGATCGCAACCGTTAAACATTTATATGAAACTAAACTGAAGGACGTGACTATTCTTATTCCAATGTTGCCCTCACTTTCCAAAAATGAGGTTTTACCTGTTTTTCCTCGGCTGGTTGATCTTCCATTGGAGAAGTTTCAGAGAGCGTTGGCTCACATATTACAGGGTTCAGCACATACACGTCCAGCTTTAACGCCTGTTGAAGTATTGATCGCCATCCACAACATAATTCCTGAAAAAGATGGCCTTGCGTTAAAGAAGATAACGGATGCTTGTTCAGCTTGTTTTGAGCAACGTACAGTGTTCACTCAGCAGGTTTTAGCAAAAGCCTTGAGCCAGATGGTTGAACAAACGCCACTCCCTCTTCTCTTCATGAGAACTGTGATTCAAGCAATTGATGCTTTTCCTACTCTGGTTGATTTTTTCATGGAGATACTTTCCAAACTTGTAAACAGACAGGTTTGGAGGATGCCAAAATTGTGGTTTGGTTTCTTGAAATGTGCATTTGAAACACAACCTCATTCGTTTCGAGTACTACTGCAGTTACCACCGCCACAGCTCGAAAATGCTTTGAACAAATATGTCAACCTTAAAGGTCCTCTTGCTGCTTATGCCAGCCAGCCCAGCACAAAATCTACTCTCTCTAGACCGACACTCGTACTTCTGGGTCTCGAAAACGACAGGCGTTTGTAG 4149 42.83 MAGVFRERALSLLAAANNHGDLTVKISSLKQVKDIILAIEPSFAAELYSYLVELQSSPESLLRKLLIEVIEDIGLRAMEHSPLLMSVLLASLKDEDSIVAGQSITSGQKLFCGALREMTLQLHRRGKVERWLEELWMRILKFKDEVLAIAIEPGSVGKRLLALKFLETYVLLFTSDTNDPQKAISEGNGDVFNISWLAGGFPILDPVVLASEANRMLGILLNLLQTSSVAGTYTVTIIGGGLKTLAHSSNLYFVLVITILKIVKGQLKPGSENGVAMLDGVRLQNCLGTLEHQWPGIGMDNWCNDYLCEWDGSLAAIARKRPVHYGIILSALLEFVPSFEMVKGRHAASIQYSIRSALLGFLRCLHPAFVELGFQSRDRLLKALRAMNAGDAADQVIRQVDKMVKAADRASRDALLGKDDQSSNQHNASVDLTRKRPRLLDDEELPNGHEVSKQVRLGPDFHPISTVRKDGTRQSAISNGTSHDVPTLDVESTPAEQMIAMIGALLAEGERGAESLEILISNIHPDLLSDIVITNMKNLPKAPPPTTRHGDLPVTHQVSSHGQVLAPSAPLSSVQTSVSTAQAPFSLATSAGSTYAESAVNSLPVDSKRDPRRDPRRLDPRRGGVSSASSVEEAISNTSDVDGSISLGKSALVPVSTTIENSSVFSISKTKVEEKIIETPFPIGTDQPTPKSKSPDRAEKVDSILEIDAPLDPFSTAVGKADDDLVAVNLVDDSATKRDDTSSSIEYNPYSPSVTNAAASEDTCEELPQLPPYVDLTPEQQISVRNLAAEKIFDSCKNLNGADCHQKCSAIIARMVAQVDADDDIVRMLEKQVASDYQQQKGHELALHVLYHLHSLNILDSVESSSFVVYEKFLLVVAKSLLDAFPASDKSFSRLLGEVPVFPDSTLELLHNLCYCDITDNQGKDSPDIERVTQGLGTVWNLIVKRPHSRQACLDIALKCAMHSEVKVRATAIRLVANKLYRLSYISDRIEQHATNMFLSAVDGVDQTDVKPLPCGSIEQSTGGEGESQETSICGSQVSDPGTSEDNSTRSSQPTVHASSTLSLSEAERHISLLFALCVKKPCLLQTVFDAYGRAPKAAKEAVHEHIPNLITALGSSNAELLRIISDPPPGSEHLLAMVLQVLTQETTPSSDLIATVKHLYETKLKDVTILIPMLPSLSKNEVLPVFPRLVDLPLEKFQRALAHILQGSAHTRPALTPVEVLIAIHNIIPEKDGLALKKITDACSACFEQRTVFTQQVLAKALSQMVEQTPLPLLFMRTVIQAIDAFPTLVDFFMEILSKLVNRQVWRMPKLWFGFLKCAFETQPHSFRVLLQLPPPQLENALNKYVNLKGPLAAYASQPSTKSTLSRPTLVLLGLENDRRL 1382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2759655 2779542 + Cp4.1LG06g03950.1 Cpe06g00470 471250

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00470 1382 Pfam Symplekin tight junction protein C terminal 1167 1345 IPR022075 -
Cpe06g00470 1382 MobiDBLite consensus disorder prediction 414 440 - -
Cpe06g00470 1382 PANTHER PHOSPHATIDYLINOSITOL 3-AND 4-KINASE FAMILY PROTEIN-RELATED 313 1380 - -
Cpe06g00470 1382 MobiDBLite consensus disorder prediction 539 568 - -
Cpe06g00470 1382 PANTHER PHOSPHATIDYLINOSITOL 3-AND 4-KINASE FAMILY PROTEIN-RELATED 1 260 - -
Cpe06g00470 1382 MobiDBLite consensus disorder prediction 1013 1061 - -
Cpe06g00470 1382 Gene3D - 2 416 IPR011989 -
Cpe06g00470 1382 MobiDBLite consensus disorder prediction 606 621 - -
Cpe06g00470 1382 MobiDBLite consensus disorder prediction 552 568 - -
Cpe06g00470 1382 PANTHER PHOSPHATIDYLINOSITOL 3-AND 4-KINASE FAMILY PROTEIN-RELATED 1 260 - -
Cpe06g00470 1382 MobiDBLite consensus disorder prediction 629 643 - -
Cpe06g00470 1382 MobiDBLite consensus disorder prediction 1021 1061 - -
Cpe06g00470 1382 PANTHER PHOSPHATIDYLINOSITOL 3-AND 4-KINASE FAMILY PROTEIN-RELATED 313 1380 - -
Cpe06g00470 1382 SUPERFAMILY ARM repeat 12 1301 IPR016024 -
Cpe06g00470 1382 MobiDBLite consensus disorder prediction 599 643 - -
Cpe06g00470 1382 Pfam Symplekin/PTA1 N-terminal 97 388 IPR032460 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00470 K06100 SYMPK; symplekin - csv:101202828 1788.85
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe02g00494 Cpe06g00470 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe10g00955 Cpe-Chr10:5384533 Cpe06g00470 Cpe-Chr6:2759655 2.76E-10 transposed
Cpe02g00494 Cpe-Chr2:2856489 Cpe06g00470 Cpe-Chr6:2759655 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g566 . . . . . . . . . . . Cma09g00609 . . . Cpe06g00470 . . . . . . . . . . . . . . . Cone4ag1271 . . . Lsi04g02305 Csa03g04524 . . . . . . . . . . . . Cmo09g00597 . . . Car09g00540 . Cpe02g00494 Bhi09g02542 Tan01g3889 . . . . . Cla11g01454 Cam11g1507 Cec11g1545 Cco11g1540 Clacu11g1672 Cmu11g1488 Cre11g1908 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004558 1 4 1 1 1 0 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 2 1 1 1 1 3 2 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00470 Cpe_Chr06 FPKM 0.902494 1.66588 6.062858 3.556226 15.178234 8.951477 15.152663 0.109204 0.0 0.0