Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00472 ACCGTCGGTCGTCGGTCGGTCGGTCTTCATTTTCACGACATGTCGTCTCTACATTTTCTCTCTCTTCTCTCTCTCCTCATCGCCTTTCTCACCGGAATCAAATCCGACGACGAACGTCAAATCCTAACCAAACTCATCTCCTCTCTCCACAACACACACGCCGCCGTCTTCCAAAATTGGGGACTCCAAAACCCCAAATGCAATTTCACCGGAATCGCCTGCAATTCACACGGGTTCGTCAACGAAATTAACCTCTCCAAATGGGGTTTAACCGGCGTTCTTCCTTTTGATTCCGTTTGCCAGTTACCGGCGTTGGAGAAGCTGATTCTTCGCGCCAATTCCCTGCACGGTGAAGTGACAGAGAGTTTAAACAATTGTGTAAAACTGAAGCATTTGGATCTCAGCAGCAATGGCTTCTCCGGCTCTTTCCCGGACATACATTCCTTGCCGGAATTGGAGTATCTGTATTTGAATTCAAGTGGGTTTTCCGGTAAGTTTCCATGGAAATCCGTCGGGAATTTGAGCGGTTTAATTGAGCTGAGCGTCGGAGATAACCCTTTTGAAAACGCTACTTTTCCGGTGGAGGTCACCAATTTGAAGAGGCTTAATTTGCTGTATTTGTCGAATTGTAGCTTAACAGGGGAAATTCCAAGATCTATTGGTAATCTCACGGAGCTTCTTAGTTTTGAATTTTCCGACAATTTTATAACAGGGGATATTCCGCCGGAGATTGGTCGCCTGCAGAAGCTCTGGCAGTTGGTGTTCTATAATAATCAATTAACGGGGACACTTCCGGTGGGATTAAGAAACCTTACCGGCCTTAAGAATTTCGATGCTTCGTTGAATTATATCCATGGGGATCTGTCGGAGTTGAGGTTTTTGACGAATTTGGTTTCTCTGCAAATGTTTGATAATCAATTTTCCGGCCATGTTCCGGTGGAGTTTGGGGAGTTTAAGTCGCTGGTTAATCTGTCCCTTTATCGGAATAGGCTTACGGGGCCTCTGCCGCAATCCATTGGTTCTTGGGCGGCGTTTGATTTCATTGATTTGGTTGGTTCGATTACTTCTGATATTGGAAAGGCTGTGTGTCTCTCTGAATTTTACGTCGGAAATAATCGATTCTCAGGCCGATTGCCATTGGAGATTTCACAAGCGGAATCTCTTGCTTCGGTTGACTTGAGCAATAATCAGTTCTCTGATGAGCTTCCGATGACTATCGGTGACCTTAAGAATCTCGATAGCCTCGAATTGCAGGGGAATAAATTCTCTGGTTCGATTCCGGAGACGATTGGCTCGTGTAATTCCCTAAGTATCGTCAATTTGGCGGATAATTTCTTCTCTGGACAAATTCCTTCGTCTCTAGGTTTTCTTCCGGTTCTCAACTCTTTGAATCTCTCCAATAATGACTTATCAGGTGAAATCCCTTCGACATTTTCGCATTTGAAATTGAGTCTTCTCGATCTTTCCAACAATCAATTATCTGGTTCAATTCCTCTATCGCTATCGAACGGAGCTTACAACGAAAGTTTCACCGGAAATCCTGGCCTCTGTAGCGAGACCGATGGCTTTTTACGGCGATGTTCAAAGAGTTCTGGCACGTCCAAGGACGTTCGAATACTCGTCATTGGTATCCTCGTCGGATTAATTCTTCTCGGTGTAACACTATGGTGCTTCATAAAATTGAGAAAGAGCGACAAATATCGAGATCGGTCGCTTGAAAAGGAATCGTGGGACCTAAAATCATTCCACGTAATGACATTCACAGAGGACGAGATACTCGATTCCATTAAGGATGAGAATTTAATCGGAAAAGGAGGTTCTGGCAACGTCTACAAAGTGACGGTCGGAAACGGGAAAGAGTTAGCTGTGAAGCACATTTGGAACACTGATCCATATGAGAGGATGAACAACAACAATAACCGAAGCTCCTCTCCAATTCTACCGAAACAGAGAGCAAAGTCGTTGGAATTCAACTCGGAGTATGGATACAGTTACAAAGTGGACGAGAAGAGCGACGTGTACAGCTTCGGAGTGGTATTGATGGAGTTAGTGAGCGGGAAAAGAGCGATCGAGGCGGAGTTCGGAGAGAACAAGGAGATCGTAGAGTGGGTATCAAACAATTTGAAGAGCAAAGAAAGTGTATTAAAGTTGGTGGATTCAAGAATTGGCGATGCATATAAAGAGGAAGCCATAAAGGTATTAAGAATAGGAATATTGTGCACAGCCAGGGTTCCTTCCATGAGACCCACCATGAGGAGTGTGGTTCAAATGCTTGAAGAAGCCCACCCCTGTCGCCTGCTTGGGATACTCATTGCCAAAGATATCGACAACATTGATATCTAA 2343 44.64 TVGRRSVGLHFHDMSSLHFLSLLSLLIAFLTGIKSDDERQILTKLISSLHNTHAAVFQNWGLQNPKCNFTGIACNSHGFVNEINLSKWGLTGVLPFDSVCQLPALEKLILRANSLHGEVTESLNNCVKLKHLDLSSNGFSGSFPDIHSLPELEYLYLNSSGFSGKFPWKSVGNLSGLIELSVGDNPFENATFPVEVTNLKRLNLLYLSNCSLTGEIPRSIGNLTELLSFEFSDNFITGDIPPEIGRLQKLWQLVFYNNQLTGTLPVGLRNLTGLKNFDASLNYIHGDLSELRFLTNLVSLQMFDNQFSGHVPVEFGEFKSLVNLSLYRNRLTGPLPQSIGSWAAFDFIDLVGSITSDIGKAVCLSEFYVGNNRFSGRLPLEISQAESLASVDLSNNQFSDELPMTIGDLKNLDSLELQGNKFSGSIPETIGSCNSLSIVNLADNFFSGQIPSSLGFLPVLNSLNLSNNDLSGEIPSTFSHLKLSLLDLSNNQLSGSIPLSLSNGAYNESFTGNPGLCSETDGFLRRCSKSSGTSKDVRILVIGILVGLILLGVTLWCFIKLRKSDKYRDRSLEKESWDLKSFHVMTFTEDEILDSIKDENLIGKGGSGNVYKVTVGNGKELAVKHIWNTDPYERMNNNNNRSSSPILPKQRAKSLEFNSEYGYSYKVDEKSDVYSFGVVLMELVSGKRAIEAEFGENKEIVEWVSNNLKSKESVLKLVDSRIGDAYKEEAIKVLRIGILCTARVPSMRPTMRSVVQMLEEAHPCRLLGILIAKDIDNIDI 780
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2787761 2790903 + Cp4.1LG06g03970.1 Cpe06g00472 471252

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00472 780 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 19 350 - -
Cpe06g00472 780 Gene3D Ribonuclease Inhibitor 291 349 IPR032675 -
Cpe06g00472 780 Gene3D Ribonuclease Inhibitor 36 191 IPR032675 -
Cpe06g00472 780 Gene3D Ribonuclease Inhibitor 192 290 IPR032675 -
Cpe06g00472 780 Gene3D Ribonuclease Inhibitor 350 449 IPR032675 -
Cpe06g00472 780 PANTHER RECEPTOR-LIKE PROTEIN KINASE 7 350 639 - -
Cpe06g00472 780 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 659 769 - -
Cpe06g00472 780 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 350 639 - -
Cpe06g00472 780 SUPERFAMILY L domain-like 294 502 - -
Cpe06g00472 780 SUPERFAMILY Protein kinase-like (PK-like) 587 630 IPR011009 -
Cpe06g00472 780 Gene3D Ribonuclease Inhibitor 450 518 IPR032675 -
Cpe06g00472 780 Gene3D Transferase(Phosphotransferase) domain 1 657 765 - -
Cpe06g00472 780 ProSitePatterns Protein kinases ATP-binding region signature. 602 624 IPR017441 GO:0005524
Cpe06g00472 780 Pfam Leucine Rich Repeat 198 223 IPR001611 GO:0005515
Cpe06g00472 780 Pfam Leucine Rich Repeat 128 145 IPR001611 GO:0005515
Cpe06g00472 780 Pfam Leucine Rich Repeat 460 481 IPR001611 GO:0005515
Cpe06g00472 780 SUPERFAMILY Protein kinase-like (PK-like) 661 759 IPR011009 -
Cpe06g00472 780 SUPERFAMILY L domain-like 42 349 - -
Cpe06g00472 780 Pfam Leucine rich repeat N-terminal domain 36 75 IPR013210 -
Cpe06g00472 780 PANTHER RECEPTOR-LIKE PROTEIN KINASE 7 659 769 - -
Cpe06g00472 780 PANTHER RECEPTOR-LIKE PROTEIN KINASE 7 19 350 - -
Cpe06g00472 780 ProSiteProfiles Leucine-rich repeat profile. 128 150 IPR001611 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00472 - - - cpap:110807830 637.106
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe06g00472 Cpe11g00500 CCT
Cpe02g00496 Cpe06g00472 CCT
Cpe06g00472 Cpe07g00194 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g02151 Cpe-Chr1:18099141 Cpe06g00472 Cpe-Chr6:2787761 2.74E-133 dispersed
Cpe06g00472 Cpe-Chr6:2787761 Cpe15g00410 Cpe-Chr15:5252990 0 dispersed
Cpe17g00387 Cpe-Chr17:2816028 Cpe06g00472 Cpe-Chr6:2787761 9.60E-49 dispersed
Cpe06g00472 Cpe-Chr6:2787761 Cpe06g00473 Cpe-Chr6:2792097 8.20E-06 tandem
Cpe10g00515 Cpe-Chr10:3024430 Cpe06g00472 Cpe-Chr6:2787761 4.05E-16 wgd
Cpe11g00500 Cpe-Chr11:2919597 Cpe06g00472 Cpe-Chr6:2787761 1.97E-13 wgd
Cpe02g00496 Cpe-Chr2:2888980 Cpe06g00472 Cpe-Chr6:2787761 8.13E-06 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g576 Blo01g01785 . . Bda03g00445 . Bpe04g00409 . Bma01g02569 Cmo05g00597 Cmo12g00184 Cma01g01455 Cma09g00611 . Car12g00210 . Cpe06g00472 Cpe07g00194 Bhi04g00891 . . . . . Lcy13g1799 . . . . . . . Cone4ag1266 Cone7ag0878 Cone17ag1151 Cone20ag0577 Lsi04g02309 Csa03g04527 Chy04g00175 Cme03g01772 . . . Bda13g01341 . Bpe14g00504 . Bma02g00096 . Cmo01g01507 Cmo09g00599 Cma12g00230 Cma05g00571 Car05g00517 Car09g00542 Cpe11g00500 Cpe02g00496 Bhi09g02546 . . . . . . . . . . . . . . Csa02g02237 Chy03g01278 Cme04g00205
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002812 1 2 1 1 1 1 2 1 1 2 2 1 3 2 1 3 2 3 2 1 2 1 2 2 2 2 1 2 2 1 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62469 PF07714 PK_Tyr_Ser-Thr 3.60E-05 CL0016 Cpe PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00472 Cpe_Chr06 FPKM 44.880241 46.849033 37.303867 36.874519 46.203598 57.953682 50.977345 49.337402 50.559608 46.864742