Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00474 ATGTCTGCTCCATTGACTCCATCAAAGAGATCACGTGATCGGAACATTGTCAAGTCCAATGGGAAAGGAAAGTGGCAGAAGACATCAGGGTCTCGTTCGCATAAGCAATCCTTCAAATTGTCTCCTGGCTATGCTATCTTTCGTGTTCTCTTTCCTGTTTCCAGAATTGACAGCCTTGTTGGTGGAGATGGAGATGTTTTATCTAAAATTAGTGAAGAAACAGGCGTAGAAATCAGAGTAGAAGACACTATCCCTGGATGTGATGAGAGAATTGTAGTAATTGGAGGCTCTAATCAAGAAACTGAAGTGAACCCCGAGGAGAAGAATAAGGAAGACAACAAAAATTCTGAAGTCGAGGAGAATGAGGGTGATAATGCCGAGTGGACAAAGAAGGAAGACAAAGTTTCTCTTCCTGGGGAAGAATCTAAACAAAAGGAGGTTCCATATTTGCAATTGCGAAAAGCCCTCTTTCTTGTTTCTGAGAAGATATTTGATGAAGAACCGGAGGCAGATGGGGCAGATGTTGAAGGTGATAAGCTGTCTACATTTGTTTTAAGATTGCTTGTTCTTTCTAGTCAAGTTGGGTGCCTATTGGGAAAGGGTGGCAGTGTAATCAAACAAATGTCATCTGATAGTGGAGCGCAAATTAGAATTCTTCCCAGGGATAAACTTCCTCCGTGCGCAACTTCCAGTGATGAGCTAGTCCAGATTAGCGGAGGAAATGATGTGGTAAAGAGAGCTCTTGAACTTGTTTTTCAGCAGCTAATTGAAAATTCACCCCATGATAAGGATCCTGTCACCTCAAGCATGACTGCACAGTCATCACATTCATCTGGACAGTCTCGTTCTTGGGCTCATGATTATCCTCTGGGTAGTAGTTCTCTTAATGCTCATGCAGGCCCTTACTCTGTGCCTCGTGAAGTTGGCAACTTTCATTCCAGTACACCGTCTCTTGCTCCTAATAAACAGTATGAAACCAGCATTCCTGGTCGAATCAAACCTTCTCAAGAAATTTTAAGTTTTCGTTTATTATGCCCATCTGAGAGAGTTGGAAATGTGATTGGAAAAGGAGGAGTAGTAGTAAAGGCTCTTCAGCAAGAGACAGGCTGTGACATCAAAGTTATTGAAAGTGCCTTGGACCCAGACGATCGCATTATACTTGTAACTGGTCCTGCGAATCCAGATGACAGAATATCACCTGTACAAGATGCTGTTTTTCGCGTTCAGGCCAGGATTGTCAAGGCTGTACCAGACAGCAAGGAGCAGAACTTGGTGGCTAGGTTTCTTGTTTACTCCAATCAAATTGGTTGTCTTCTTGGGAAAGGTGGCTCCATCATAGCTGAAATGAGAAAGTCGACTGGTGCATATATTCGTATTTTAGGAAAGGAGCAGGTCCCAAAGTGTGTTGGTGAAGATGAAGAAATGGTCCAGATAAATGGAGATCCTGAAACAGTTCAAGATGCTATGTTGCAGATAACTACTCGGCTGAGGCAGCATTTTTTCCGCGATGCATTTCCATCAGTTAATAATCATCCAAATCCTGCATTTGTTGATAGACTTCCTTCATTTCCTTCGTATTTTGGAAGGAGGGAATTGTCACCACCAGGAATCTATTCAAATTTAGGACCCTCATTTCACAAGTTTGATGCTCTTAGTGGCATTCCTTCACTTAGTGATTTGCGAGATGATCGACCTGCTTTTCTTCATAGGCCAGGTGCTCCTCTGTTATCTGATAGAAAACCATGGAGCTCTCAGGGACTAGTTGAAGGTGGTGTTGGCTTGCCAGACTTTACAGGAGCCCATCATAGGAGAATCGCTGGATTTGGAGGAGTAAATAATCCAGCTATTATTACGAGCACCACTGTTGAAGTAGCTGTTCCTCGAGACCTTGTCCCCGTTATTTGTGGAGAGAATGGTGAATGTTTGAAACAGATTCGTCAGATTTCTGATGCAAAAATTACGATTACTGAGCCAAAGCAAGGAGCTGTTGAAACTGTGATTATCATTTCTGGAACACCCGAGCAAACCCATGCGGCTCAGAGTCTTATTCAAGCTTTTGTAATCAGCGAGACGGAGTCTAGTTGA 2085 42.97 MSAPLTPSKRSRDRNIVKSNGKGKWQKTSGSRSHKQSFKLSPGYAIFRVLFPVSRIDSLVGGDGDVLSKISEETGVEIRVEDTIPGCDERIVVIGGSNQETEVNPEEKNKEDNKNSEVEENEGDNAEWTKKEDKVSLPGEESKQKEVPYLQLRKALFLVSEKIFDEEPEADGADVEGDKLSTFVLRLLVLSSQVGCLLGKGGSVIKQMSSDSGAQIRILPRDKLPPCATSSDELVQISGGNDVVKRALELVFQQLIENSPHDKDPVTSSMTAQSSHSSGQSRSWAHDYPLGSSSLNAHAGPYSVPREVGNFHSSTPSLAPNKQYETSIPGRIKPSQEILSFRLLCPSERVGNVIGKGGVVVKALQQETGCDIKVIESALDPDDRIILVTGPANPDDRISPVQDAVFRVQARIVKAVPDSKEQNLVARFLVYSNQIGCLLGKGGSIIAEMRKSTGAYIRILGKEQVPKCVGEDEEMVQINGDPETVQDAMLQITTRLRQHFFRDAFPSVNNHPNPAFVDRLPSFPSYFGRRELSPPGIYSNLGPSFHKFDALSGIPSLSDLRDDRPAFLHRPGAPLLSDRKPWSSQGLVEGGVGLPDFTGAHHRRIAGFGGVNNPAIITSTTVEVAVPRDLVPVICGENGECLKQIRQISDAKITITEPKQGAVETVIIISGTPEQTHAAQSLIQAFVISETESS 694
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2804232 2809662 - Cp4.1LG06g03900.1 Cpe06g00474 471254

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00474 694 CDD PCBP_like_KH 340 409 - -
Cpe06g00474 694 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 43 100 IPR036612 GO:0003723
Cpe06g00474 694 MobiDBLite consensus disorder prediction 260 285 - -
Cpe06g00474 694 MobiDBLite consensus disorder prediction 1 37 - -
Cpe06g00474 694 Gene3D K Homology domain, type 1 46 103 IPR036612 GO:0003723
Cpe06g00474 694 Gene3D K Homology domain, type 1 617 690 IPR036612 GO:0003723
Cpe06g00474 694 Gene3D K Homology domain, type 1 420 500 IPR036612 GO:0003723
Cpe06g00474 694 Gene3D K Homology domain, type 1 180 259 IPR036612 GO:0003723
Cpe06g00474 694 CDD KH-I 621 684 - -
Cpe06g00474 694 ProSiteProfiles Type-1 KH domain profile. 619 683 - -
Cpe06g00474 694 SMART kh_6 337 417 IPR004087 GO:0003676
Cpe06g00474 694 SMART kh_6 422 497 IPR004087 GO:0003676
Cpe06g00474 694 SMART kh_6 618 688 IPR004087 GO:0003676
Cpe06g00474 694 SMART kh_6 181 256 IPR004087 GO:0003676
Cpe06g00474 694 SMART kh_6 43 113 IPR004087 GO:0003676
Cpe06g00474 694 CDD PCBP_like_KH 425 493 - -
Cpe06g00474 694 Gene3D K Homology domain, type 1 338 414 IPR036612 GO:0003723
Cpe06g00474 694 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 172 257 IPR036612 GO:0003723
Cpe06g00474 694 CDD PCBP_like_KH 184 252 - -
Cpe06g00474 694 MobiDBLite consensus disorder prediction 308 329 - -
Cpe06g00474 694 ProSiteProfiles Type-1 KH domain profile. 423 492 - -
Cpe06g00474 694 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 1 559 - -
Cpe06g00474 694 ProSiteProfiles Type-1 KH domain profile. 182 251 - -
Cpe06g00474 694 MobiDBLite consensus disorder prediction 103 141 - -
Cpe06g00474 694 PANTHER KH DOMAIN-CONTAINING PROTEIN HEN4-LIKE 1 559 - -
Cpe06g00474 694 MobiDBLite consensus disorder prediction 259 285 - -
Cpe06g00474 694 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 418 503 IPR036612 GO:0003723
Cpe06g00474 694 ProSiteProfiles Type-1 KH domain profile. 338 405 - -
Cpe06g00474 694 MobiDBLite consensus disorder prediction 306 329 - -
Cpe06g00474 694 MobiDBLite consensus disorder prediction 94 142 - -
Cpe06g00474 694 Pfam KH domain 47 100 IPR004088 GO:0003723
Cpe06g00474 694 Pfam KH domain 621 684 IPR004088 GO:0003723
Cpe06g00474 694 Pfam KH domain 341 392 IPR004088 GO:0003723
Cpe06g00474 694 Pfam KH domain 426 492 IPR004088 GO:0003723
Cpe06g00474 694 Pfam KH domain 185 251 IPR004088 GO:0003723
Cpe06g00474 694 ProSiteProfiles Type-1 KH domain profile. 44 110 - -
Cpe06g00474 694 MobiDBLite consensus disorder prediction 21 37 - -
Cpe06g00474 694 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 340 414 IPR036612 GO:0003723
Cpe06g00474 694 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 619 688 IPR036612 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00474 K21444 PCBP3_4; poly(rC)-binding protein 3/4 - csv:101221201 1135.55
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe02g00498 Cpe06g00474 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g02399 Cpe-Chr1:20014574 Cpe06g00474 Cpe-Chr6:2804232 1.63E-34 dispersed
Cpe06g00474 Cpe-Chr6:2804232 Cpe15g00381 Cpe-Chr15:5032892 5.89E-90 dispersed
Cpe11g00999 Cpe-Chr11:8431854 Cpe06g00474 Cpe-Chr6:2804232 3.62E-15 dispersed
Cpe02g00498 Cpe-Chr2:2908051 Cpe06g00474 Cpe-Chr6:2804232 7.15E-15 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g580 Blo01g01784 . . . Bpe02g00157 . . Bma01g02568 . . . Cma09g00613 . . . Cpe06g00474 . . . . . . . . . . . . . . . Cone4ag1264 Cone7ag0879 . . Lsi04g02311 Csa03g04530 Chy04g00173 . . . Bda11g00816 . . . . . Sed05g1523 Cmo01g01505 Cmo09g00601 . . . Car09g00545 . Cpe02g00498 Bhi09g02548 Tan01g3895 Cmetu04g0312 . Hepe01g2200 . . Cla11g01461 Cam11g1513 Cec11g1551 Cco11g1546 . Cmu11g1494 Cre11g1915 . . . Cme04g00201
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007521 1 1 1 1 1 0 3 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00474 Cpe_Chr06 FPKM 3.494592 4.701818 7.070224 7.652693 18.46081 17.13715 18.745733 7.503666 7.199389 7.818688