Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00481 ATGGCGGTCGCTGCAGAAAACCAACCCCAGGAGAAGATCACTACCACGGAGGCCTCTGCTGTCGAAAAGAGAAGATGGACGCTTAACGACTTTGACATCGGGAAGCCTCTCGGAAGAGGGAAATTCGGTCATGTGTATCTGGCTAGGGAAAAGAGGAGTAATCAAATTGTGGCGCTGAAAGTTTTATTCAAGAGTCAGTTACAACAGTCGCAGGTTGAGCACCAGCTTCGTCGGGAAGTTGAAATACAGAGTCATCTTAGACACTCCAACATTCTGCGCCTTTATGGATACTTCTACGATCAAAAACGGATTTATTTGGTATTGGAATATGCTCCCAAAGGTGAGCTTTACAAGGAACTACAGAAGTGCAAGTACTTCAGTGAGAGACGTGCTGCTACTTACATTGCGTCGTTGGCTCGAGCACTCATTTACTGTCATGGAAAACATGTAATCCACAGAGACATCAAACCAGAAAATCTTCTAATTGGTGCTCAGGGTGAACTCAAGATCGCTGATTTTGGATGGTCGGTGCACACGTTTAACCGTAGGCGGACTATGTGTGGGACACTGGATTATCTGTCTCCTGAAATGGTGGAGAGTGTGGAACACGATGCAAGTGTGGATATCTGGAGTCTTGGTGTCCTGTGCTATGAGTTTCTCTATGGGGTACCCCCATTTGAGGCTAAGGAACACTCTGACACGTACAGGAGAATTATGCAAGTTGATTTGAAGTTTCCTCCAAGACCAATCATTTCTTCAACTGCAAAGGACCTTATCAGTCAGATGCTTGTCAAGGAGTGCTCTCAACGGCTACCACTACACAAAGTTCTCGAACACCCTTGGATTGTCCAAAATTCAGAGCCCTCTGGTGTATATAAGAGTTGA 885 45.65 MAVAAENQPQEKITTTEASAVEKRRWTLNDFDIGKPLGRGKFGHVYLAREKRSNQIVALKVLFKSQLQQSQVEHQLRREVEIQSHLRHSNILRLYGYFYDQKRIYLVLEYAPKGELYKELQKCKYFSERRAATYIASLARALIYCHGKHVIHRDIKPENLLIGAQGELKIADFGWSVHTFNRRRTMCGTLDYLSPEMVESVEHDASVDIWSLGVLCYEFLYGVPPFEAKEHSDTYRRIMQVDLKFPPRPIISSTAKDLISQMLVKECSQRLPLHKVLEHPWIVQNSEPSGVYKS 294
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2833608 2836553 + Cp4.1LG06g03870.1 Cpe06g00481 471261

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00481 294 Pfam Protein kinase domain 33 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe06g00481 294 PANTHER SERINE/THREONINE-PROTEIN KINASE IAL-RELATED 1 293 IPR030616 GO:0004672
Cpe06g00481 294 Gene3D Transferase(Phosphotransferase) domain 1 115 292 - -
Cpe06g00481 294 SUPERFAMILY Protein kinase-like (PK-like) 19 286 IPR011009 -
Cpe06g00481 294 ProSitePatterns Serine/Threonine protein kinases active-site signature. 150 162 IPR008271 GO:0004672|GO:0006468
Cpe06g00481 294 ProSitePatterns Protein kinases ATP-binding region signature. 37 60 IPR017441 GO:0005524
Cpe06g00481 294 PIRSF ILK 3 280 - -
Cpe06g00481 294 ProSiteProfiles Protein kinase domain profile. 31 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe06g00481 294 SMART serkin_6 31 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe06g00481 294 CDD STKc_Aurora 30 283 - -
Cpe06g00481 294 PANTHER SERINE/THREONINE-PROTEIN KINASE AURORA-1 1 293 - -
Cpe06g00481 294 Gene3D Phosphorylase Kinase; domain 1 18 114 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00481 K08850 AURKX; aurora kinase, other [EC:2.7.11.1] - csv:101219866 584.334
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe02g00504 Cpe06g00481 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00481 Cpe-Chr6:2833608 Cpe10g00071 Cpe-Chr10:526181 9.03E-53 dispersed
Cpe08g00496 Cpe-Chr8:3204772 Cpe06g00481 Cpe-Chr6:2833608 1.48E-137 transposed
Cpe13g00073 Cpe-Chr13:568617 Cpe06g00481 Cpe-Chr6:2833608 3.16E-42 transposed
Cpe02g00504 Cpe-Chr2:2953293 Cpe06g00481 Cpe-Chr6:2833608 0 wgd
Cpe02g00329 Cpe-Chr2:1747908 Cpe06g00481 Cpe-Chr6:2833608 4.95E-51 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g37 . Blo12g01056 . . . . . . . . Cma01g01444 . Car09g00552 . . . Cpe06g00481 . . . . . . . . . . . . . . . . . Cone20ag0325 Lsi04g02318 Csa03g04537 Chy04g00166 . . . . Bda13g01320 . . . Bma02g00077 . Cmo01g01498 . Cma09g00623 . . . . Cpe02g00504 Bhi09g02557 . . . . Mch11g0757 . . . . . . . . . . . Cme04g00191
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002459 2 3 1 2 1 1 3 2 2 1 1 1 3 2 2 2 2 4 3 2 2 2 2 2 1 1 2 3 1 2 58
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62471 PF00069 Pkinase 3.10E-74 CL0016 Cpe PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00481 Cpe_Chr06 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0