Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00482 ATGCTTCTCCGAGCATCCCCTCTTCTTCGCGCCTCCCACCGTCCATTCTCCTCTGGGGTTCACATGGCGCTAGCTGCCCATCTCCTTGTCTATCCCAACCATCAAAGTTTCCCTTCATGGCGATCTTCTTCGCACTTGCCGCCTGTGTGTCAAGCGAATGGCTACGACCGCATTTCGCCCAAATTAACATTTTCACAATTTGTTCGGAGTTTCTACGTCTTGTCGGGAACACACAATAAGGTACAAAGGCCTTGTGGAAGGATTTTCTGTGGGCAAAGAGAGTATAGAAAGGTGAGGAGACGAGTCCCCAAAACCAAGAAAAAGGAATTAGAGCTCAACGTCAGTATCTGTATTGAAGAAAAGTTGCCGGACGACCCTGAACTTTTGAGTATTGCAGAAATGCTTCGTTTGAATGTTCCTAAGGCTCTGAAGTTAGCTTTCAACAATTTAAAGGATTCACAATACAAAACTCGAGATAGTTCAATAAACGATGTTGGTTTATTTGAAAGTGTTGAGATGTCCGTGCTACTTTGTAACGACGAGTTTATCTGTAAACTTAACAAAGAATGGAGGGACGAGGATCATGCCACTGATGTCCTGTCCATGTCACAGCATGTCCCAGAACTGAAGCTTCCAATTCTTATGTTAGGTGATATTGTCATTTCCGTTGAGACTGCTGCGAGGCAGGCGGAGGAACGGGGACACACGCTCCTTGATGAGATTCGGATACTCCTGACCATGTTCTCTGTGTATGTTCTTACTATTCACATGTTTAAAGACAGGAAAAAAGAAGGAAGTCTCCGATTTTACCGCCCAAGGTTCAGCTATATTTTCTGTGATATGGATGGTACATTGCTCAACAGTAAAAGTCAAATTACTCCAACAACTGTCAAGGCCCTGAAGGAGGCCTTGTCAAGAGGTGTGAAAGTTGTTATAGCTACTGGAAAGGGACTACTTGTTTATGGCAGACAAGGCAAGGAAATTTATAGGCGGAACTTAGATCAAGATATCTGCAGAGAGGCATGCCTTTATTCTTTAGAGAAGAATGTTCCTCTGATTGCATTTGGTGAAGGCCGTTGCTTAACTCTATTTGATCATCCACTTACTGATGCATTGCACACTATATACCATGAGCCCAAGGCAGAGGTGATGTCCTCGGTTGATAATCTTTTGGCTGCAGCTGAAATACAGAAACTTCTTTTCTTGGACACTGCCGAGGGAGTTTCACGCGTTCTTCGACCATACTGGTCAGAGGCATCAGGGGAGCACGCCTCGGTTGTTCAGGCTGTACCAGATATGCTTGAGATCGTCCCCTGCGGAACCTCGAAAGGTAGCGGAGTAAAATTGTTGCTCGATCATTTGGGAGTTTCTTCCGAGGAGGTAATGGCTATTGGAGATGGGGAAAATGACATTGAGATGCTGGAATTGGCATCTCTTGGAATTGCTATGAGCAATGGAGCAGAGAAAACAAAGGCTGTTGCTAACTTAATTGGTCCCAGCAATGATGAAGATGGTGTTGCAGAGGTCATATACAGATATGCATTCTAG 1548 44.7 MLLRASPLLRASHRPFSSGVHMALAAHLLVYPNHQSFPSWRSSSHLPPVCQANGYDRISPKLTFSQFVRSFYVLSGTHNKVQRPCGRIFCGQREYRKVRRRVPKTKKKELELNVSICIEEKLPDDPELLSIAEMLRLNVPKALKLAFNNLKDSQYKTRDSSINDVGLFESVEMSVLLCNDEFICKLNKEWRDEDHATDVLSMSQHVPELKLPILMLGDIVISVETAARQAEERGHTLLDEIRILLTMFSVYVLTIHMFKDRKKEGSLRFYRPRFSYIFCDMDGTLLNSKSQITPTTVKALKEALSRGVKVVIATGKGLLVYGRQGKEIYRRNLDQDICREACLYSLEKNVPLIAFGEGRCLTLFDHPLTDALHTIYHEPKAEVMSSVDNLLAAAEIQKLLFLDTAEGVSRVLRPYWSEASGEHASVVQAVPDMLEIVPCGTSKGSGVKLLLDHLGVSSEEVMAIGDGENDIEMLELASLGIAMSNGAEKTKAVANLIGPSNDEDGVAEVIYRYAF 515
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2837392 2844398 - Cp4.1LG06g03760.1 Cpe06g00482 471262

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00482 515 CDD HAD_Pase 277 512 - -
Cpe06g00482 515 PANTHER ENDORIBONUCLEASE YBEY, CHLOROPLASTIC 258 316 IPR002036 GO:0004222|GO:0006364
Cpe06g00482 515 Pfam haloacid dehalogenase-like hydrolase 277 316 - -
Cpe06g00482 515 Pfam haloacid dehalogenase-like hydrolase 320 510 - -
Cpe06g00482 515 Pfam Endoribonuclease YbeY 168 246 IPR002036 GO:0004222|GO:0006364
Cpe06g00482 515 TIGRFAM TIGR00043: rRNA maturation RNase YbeY 172 245 IPR002036 GO:0004222|GO:0006364
Cpe06g00482 515 Gene3D - 273 359 IPR023214 -
Cpe06g00482 515 Gene3D Metalloproteases ("zincins"), catalytic domain 142 251 IPR023091 GO:0004222
Cpe06g00482 515 ProSitePatterns Hypothetical cof family signature 2. 464 486 - -
Cpe06g00482 515 Gene3D - 384 514 IPR023214 -
Cpe06g00482 515 PANTHER ENDORIBONUCLEASE YBEY, CHLOROPLASTIC 35 245 - -
Cpe06g00482 515 PANTHER ENDORIBONUCLEASE YBEY, CHLOROPLASTIC 258 316 - -
Cpe06g00482 515 PANTHER ENDORIBONUCLEASE YBEY, CHLOROPLASTIC 316 515 - -
Cpe06g00482 515 ProSitePatterns Hypothetical cof family signature 1. 276 287 - -
Cpe06g00482 515 PANTHER ENDORIBONUCLEASE YBEY, CHLOROPLASTIC 35 245 IPR002036 GO:0004222|GO:0006364
Cpe06g00482 515 PANTHER ENDORIBONUCLEASE YBEY, CHLOROPLASTIC 316 515 IPR002036 GO:0004222|GO:0006364
Cpe06g00482 515 SUPERFAMILY HAD-like 272 513 IPR036412 -
Cpe06g00482 515 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 430 483 IPR006379 -
Cpe06g00482 515 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 168 245 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00482 - - - cmo:103503611 845.114
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g30 . . . . . . . . . . . . Car09g00553 . . . Cpe06g00482 . . . . . . . . . . . . . . . . . . Lsi04g02320 Csa03g04539 Chy04g00164 . . . . . . . . . Sed12g1384 . . Cma09g00626 . . . . . Bhi09g02561 Tan01g3910 Cmetu04g0733 . Hepe01g2210 Mch11g0758 . . . . . . . . . . . Cme04g00188
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009056 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 2 1 4 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00482 Cpe_Chr06 FPKM 10.938202 10.365539 19.443151 18.737823 12.337742 12.655457 12.889451 5.261855 6.543301 5.560721