Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00484 TGGTTTATTTGTAATCATAAACCCATAAAAAGCCCAAAAGGCAGCGAAGGCGGGGATCCGTCCAGCCGGCCCGTTTGGATATTTCTGATCGACGAGGGAACTGCAAGTACTCCTCGGTCCAAACATCAAGAAACAGTGGAGCATGGAGCGTCTCCGGCCGAGGGACAGACAGATGTTTTCCGGGTTTACGAAGGGCGAGCGAAAATGGAGAAATTGATAGAGGAATCAGGAGAACAATTGCTTGATCGAGATTTTTGTCAAAAAGTTACCAAACGTTTCAATCGGTCCTCCGGTCGTGCTGGGAAGCCTGTAATAAAGTGGATGGAGGTATACGATTGGTTTGAAAGCAGACTGCAAGACTTCCCAAAAATTGAAAAGAGGATGTCTGAAATTCCGAAAGCTTGCCCTTCCAATAAGACTCAGGAAAGTTCTCAAGGCCCCGAAGGCAAAAAGAAACCAGATTTGTCAGAGTTGGAATTTGAAGCAAGGTCATCAAAAGATGGTGCATGGTATGATGTTGCTATGTTCCTTACACATAGATTTCTTAGTTCAGGCGAAGCTGAAGTGCGTGTCAGATTTGTTGGATTTGGAGCTGAGGAAGATGAATGGGTCAACATAAAACAGGCAGTACGAGAACGCTCTGTCCCTCTAGAACATTCAGAGTGCCAGAAGGTGAAGGCTGGGGACCTTGTACTCTGCTTCCAGGAGAGGAGGGATCAGGCAATCTACTACGATGCCCATATTGTAGAAGTCCAGAGGAGAATGCATGATATTAGGGGCTGCAGGTGTCTTTTCTTGATTCGTTACGATCATGATAGCACCGAGGAAAAAGTTCGTTTAAGAAGATTATGTCGCAGACCGGCACATCAATTCTAA 876 45.66 WFICNHKPIKSPKGSEGGDPSSRPVWIFLIDEGTASTPRSKHQETVEHGASPAEGQTDVFRVYEGRAKMEKLIEESGEQLLDRDFCQKVTKRFNRSSGRAGKPVIKWMEVYDWFESRLQDFPKIEKRMSEIPKACPSNKTQESSQGPEGKKKPDLSELEFEARSSKDGAWYDVAMFLTHRFLSSGEAEVRVRFVGFGAEEDEWVNIKQAVRERSVPLEHSECQKVKAGDLVLCFQERRDQAIYYDAHIVEVQRRMHDIRGCRCLFLIRYDHDSTEEKVRLRRLCRRPAHQF 291
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2851980 2859299 + Cp4.1LG06g03830.1 Cpe06g00484 471264

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00484 291 Gene3D - 155 216 - -
Cpe06g00484 291 PANTHER OS09G0346900 PROTEIN 67 288 - -
Cpe06g00484 291 Pfam SAWADEE domain 157 284 IPR032001 GO:0003682
Cpe06g00484 291 Gene3D - 217 289 - -
Cpe06g00484 291 PANTHER PROTEIN SAWADEE HOMEODOMAIN HOMOLOG 2 67 288 IPR039276 -
Cpe06g00484 291 MobiDBLite consensus disorder prediction 129 157 - -
Cpe06g00484 291 MobiDBLite consensus disorder prediction 34 53 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00484 - - - csv:101218909 427.943
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe02g00507 Cpe06g00484 CCT
Cpe06g00484 Cpe14g00345 CCT
Cpe01g00501 Cpe06g00484 CCT
Cpe02g00507 Cpe06g00484 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00501 Cpe-Chr1:2887891 Cpe06g00484 Cpe-Chr6:2851980 4.93E-67 dispersed
Cpe06g00484 Cpe-Chr6:2851980 Cpe14g00345 Cpe-Chr14:2107933 2.16E-68 dispersed
Cpe17g00532 Cpe-Chr17:4451931 Cpe06g00484 Cpe-Chr6:2851980 9.71E-59 transposed
Cpe02g00507 Cpe-Chr2:2975112 Cpe06g00484 Cpe-Chr6:2851980 2.63E-107 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g6 . . . . . . . . . . Cma01g01441 . Car09g00555 . . . Cpe06g00484 . . . . . . . . . . . . . . . . . . Lsi04g02322 Csa03g04542 Chy04g00161 . . . . . . . . . . Cmo01g01495 . Cma09g00627 . . . . Cpe02g00507 Bhi09g02568 . . . Hepe01g2213 Mch11g0761 . . . . . . . . . . . Cme04g00185
Vvi19g157 . . . . . Bpe08g01000 . . Cmo16g00443 Cmo04g00593 . . . Car09g00555 . Cpe06g00484 . . . . . . . . . . . . . . . Cone6ag0175 Cone9ag0200 Cone14ag1044 Cone15ag1033 . . . . . . . . . . Bma07g01164 . . . Cmo09g00611 Cma04g00558 Cma16g00411 Car04g00528 Car16g00375 Cpe14g00345 Cpe01g00501 . . . . . . . Cla05g00992 Cam05g1083 Cec05g1091 Cco05g1085 Clacu05g1077 Cmu05g1027 Cre05g1101 . . Chy06g01172 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007683 2 2 0 2 0 0 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 2 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00484 Cpe_Chr06 FPKM 7.082846 6.282745 31.498322 29.705276 17.382534 19.369879 17.474438 25.012894 23.680269 22.786333