Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe06g00487 | ATGATGGCTGTCACTTCCGCCTGCAAGGATTCTGCTACCAAGATCAGCAGCTTGGATAATGGGAAGTATGTCAGGTACACACCTGAGCAAGTCGAAGCTCTTGAGAGGCTCTATTATGAATGCCCAAAACCCAGTTCAATGCGCCGCCAGCAGCTCATTCGGGAGTGCCCAATTCTCTCCGATATCGAACCCAAGCAGATCAAAGTTTGGTTCCAAAACCGGAGATGTAGAGAGAAGCAGAGGAAGGAGGCATCCCGTTTGCAGACTGTGAACAGGAAGCTGACGGCTATGAATCGACTTCTAATGGAGGAAAATGATAGGTTGCAGAAACAAGTGTCACAGCTTGTGTATGAGAACAGCTATTTTCGTCAACAGACCCAGAATGCGACCCTAGCCACCACTGACACAAGTTGTGAGTCTGTGGTGACAAGTGGTCAGCAGAATTTGACTCCGCCGCACCCACCAAAGGATGCCAGTCCCGCAGGACTGTTGTCCATTGCGGAGGAGACTTTAGCAGAGTTTCTTTCAAAGGCTACTGGAACTGCTGTGGAGTGGGTCCAAATGCCTGGGATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCATGGTTGCACTGGAGTTGCTGCTCGTGCATGTGGACTTGTGGGTCTTGAACCCACAAGAGTGGCTGAAATTCTTAAAGATTGGCCTTCTTGGTTTCGCGATTGCCGTGCCGTTGATGTTCTAAATGTCCTATCTACTGGAAATGGAGGAACCATTGAGCTTCTGTACATGCAGCTCTATGCACCTACTACTTTGGCACCTGCTCGTGATTTCTGGCTGCTGCGCTACACATCGATTTTGGAGGATGGTAGTCTTGTGGTCTGTGAAAGATCTCTTAACAATACTCAGAATGGTCCAAGTATGCCTCCAGTACAGAACTTTGTAAGAGCAGAAATGCTATCAAGTGGGTATTTGATAAGACCTTGTGAAGGCGGTGGATCAATAATCCATATGGTTGATCACATGGACTTAGAACCATGGAGCGTGCCTGAAGTGTTGCGGCCATTATACAAGTCATCTACTCTGCTTGCTCAGAAGAACACAATGGCAGCATTACGCTTGTTGAGACAGATTTCACAAGAAGTTTCTCAACCAAATGTTACTGGTTGGGGAAGAAGGCCTGCTGCTCTTCGTGCTCTTAGTCAGAAATTGAGCAGAGGTTTCAACGAAGCAGTAAACGGGTTTACAGACGAGGGATGGTCTTTGTTAGAAAATGATGGCATTGATGATGTTACACTTCTTGTAAACATGTCTCATGGCAAGACAATGATGGGTGCAAATATGTCATATTCTAATGGCTTTCCATCTATGAGCAATGCCGTGCTTTGTGCGAAAGCATCGATGTTATTACAGAATGTCACTCCAGCAATGCTCATTAGGTTCTTGAGAGAACACCGTTCAGAATGGGCAGACAGCAGTATTGATGCTTACTCAGCTGCAGCAATCAAAACCGGCCAGTGTGGTTTACCAGGGTCTCATGCTGGAACTTTTGGGGCCTCAGAGTTCCCACGGATAATGCAGCAGGGCTTCATTTGTCTTCAAGGGGGTATCTGCTTGTCAAGCATGGGAAGGGCAATATCCTACGACAAAGCTGTGGCATGGAAGGTTTTGAATGAAGAAGAAAACGCTCACTGTATTTGCTTCATGTTTATGAACTGGTCTTTTGTTTGA | 1722 | 46.63 | MMAVTSACKDSATKISSLDNGKYVRYTPEQVEALERLYYECPKPSSMRRQQLIRECPILSDIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLTAMNRLLMEENDRLQKQVSQLVYENSYFRQQTQNATLATTDTSCESVVTSGQQNLTPPHPPKDASPAGLLSIAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPTRVAEILKDWPSWFRDCRAVDVLNVLSTGNGGTIELLYMQLYAPTTLAPARDFWLLRYTSILEDGSLVVCERSLNNTQNGPSMPPVQNFVRAEMLSSGYLIRPCEGGGSIIHMVDHMDLEPWSVPEVLRPLYKSSTLLAQKNTMAALRLLRQISQEVSQPNVTGWGRRPAALRALSQKLSRGFNEAVNGFTDEGWSLLENDGIDDVTLLVNMSHGKTMMGANMSYSNGFPSMSNAVLCAKASMLLQNVTPAMLIRFLREHRSEWADSSIDAYSAAAIKTGQCGLPGSHAGTFGASEFPRIMQQGFICLQGGICLSSMGRAISYDKAVAWKVLNEEENAHCICFMFMNWSFV | 573 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 2880183 | 2885060 | - | Cp4.1LG06g03780.1 | Cpe06g00487 | 471267 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe06g00487 | 573 | CDD | START_ArGLABRA2_like | 160 | 375 | - | - | |
Cpe06g00487 | 573 | CDD | homeodomain | 22 | 82 | IPR001356 | GO:0003677 | |
Cpe06g00487 | 573 | ProSiteProfiles | 'Homeobox' domain profile. | 17 | 81 | IPR001356 | GO:0003677 | |
Cpe06g00487 | 573 | ProSiteProfiles | START domain profile. | 156 | 370 | IPR002913 | GO:0008289 | |
Cpe06g00487 | 573 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 | 517 | 573 | IPR044830 | GO:0003700 | |
Cpe06g00487 | 573 | SMART | HOX_1 | 19 | 85 | IPR001356 | GO:0003677 | |
Cpe06g00487 | 573 | Pfam | START domain | 166 | 374 | IPR002913 | GO:0008289 | |
Cpe06g00487 | 573 | SUPERFAMILY | Homeodomain-like | 21 | 84 | IPR009057 | - | |
Cpe06g00487 | 573 | Coils | Coil | 91 | 118 | - | - | |
Cpe06g00487 | 573 | CDD | bZIP | 74 | 113 | - | - | |
Cpe06g00487 | 573 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 | 6 | 516 | IPR044830 | GO:0003700 | |
Cpe06g00487 | 573 | SUPERFAMILY | Bet v1-like | 165 | 375 | - | - | |
Cpe06g00487 | 573 | Gene3D | - | 14 | 88 | - | - | |
Cpe06g00487 | 573 | PANTHER | CLASS III HD-ZIP PROTEIN CNA1 | 6 | 516 | - | - | |
Cpe06g00487 | 573 | Gene3D | - | 200 | 377 | IPR023393 | - | |
Cpe06g00487 | 573 | SMART | START_1 | 165 | 375 | IPR002913 | GO:0008289 | |
Cpe06g00487 | 573 | PANTHER | CLASS III HD-ZIP PROTEIN CNA1 | 517 | 573 | - | - | |
Cpe06g00487 | 573 | Pfam | MEKHLA domain | 517 | 572 | IPR013978 | - | |
Cpe06g00487 | 573 | Pfam | Homeodomain | 22 | 80 | IPR001356 | GO:0003677 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe06g00487 | Cpe-Chr6:2880183 | Cpe07g00669 | Cpe-Chr7:5380729 | 0 | dispersed | |
Cpe06g00487 | Cpe-Chr6:2880183 | Cpe06g00492 | Cpe-Chr6:2918408 | 0 | proximal | |
Cpe12g00658 | Cpe-Chr12:6406594 | Cpe06g00487 | Cpe-Chr6:2880183 | 0 | transposed | |
Cpe17g00535 | Cpe-Chr17:4476077 | Cpe06g00487 | Cpe-Chr6:2880183 | 0 | transposed | |
Cpe02g00509 | Cpe-Chr2:2996775 | Cpe06g00487 | Cpe-Chr6:2880183 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
49661 | PF01852 | START | 4.50E-53 | CL0209 | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe06g00487 | K09338 | - | csv:101218438 | 1012.29 |