Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00489 ATGGCGATGGCGGTTCCAATAGGCCAATATGCAGAGAATGTTGAGAAAAATCTGAGGTTTCCTCTGCCAATTCATTCTGAAGCTCCCCACTATTTCCACCCTGCTTTTTCCACCCAAAACCCACACTCCTCCGATACACTTGAAACCACCGCCACCGCCGCCGCCGCCGACCATTTCCTTGTCGAAGACCTCCTGGATTTCTCTAATGATGACCATGTCGTCTTCACCGACGCCACTTCTGACAACCAAACCCCCACCTCAACTGATTCCTCCACTCTCACTTTACTCGAACAACCCAACAATGGACACCACAATTACAGCTTNCACCACAATTATAGCTACCTCGACGCCAATTTCTCCACCGACCTTCCTGTTCCGTACGACGACTTAGCAGAGCTCGAATGGCTTTCCAATTTCGTTGAGGATTCTTTCTCCACCGACGATTTGGAGAAGCTGAGTCTGATATCAGGGGTGAATTCCCGGACCGACGACGACGCCGCCGCAAAACCCAGAGAATTTCAAACCGGACACTCCGCCGGTTTCCACCCCGACATGTCGGTACCGGCGAAAGCCGCTCGTAGCAAGAGGTCTCGGGCATGTATATGGAATTCCAGAGTATCCGTACTCTCCCCGACAAATTCCTCTTCCGAAACCGACGTTGTCGTCACGCTCACGGCTAAGAAACCATCCAAGAAGAAAGAAACCCCCGACGACACGTTGTCCCCCAGCAATGGGGAAGGTCGGAAATGTCTCCATTGCGCCACCGACAAAACACCTCAGTGGCGAACCGGTCCATTTGGTCCTAAAACCTTGTGTAACGCTTGTGGGGTTCGGTACAAATCCGGCCGCCTCGTACCGGAGTATCGACCAGCTGCAAGCCCGACATTCGTGCTGACAAAACACTCCAATTCTCACCGGAAAGTCATGGAACTCCGGCGACAAAAGGAAATGATGAGAGCACAACAACAACAACAACAACATCTNTCCGGCGACAAAAGGAAATGA 1005 51.74 MAMAVPIGQYAENVEKNLRFPLPIHSEAPHYFHPAFSTQNPHSSDTLETTATAAAADHFLVEDLLDFSNDDHVVFTDATSDNQTPTSTDSSTLTLLEQPNNGHHNYSXHHNYSYLDANFSTDLPVPYDDLAELEWLSNFVEDSFSTDDLEKLSLISGVNSRTDDDAAAKPREFQTGHSAGFHPDMSVPAKAARSKRSRACIWNSRVSVLSPTNSSSETDVVVTLTAKKPSKKKETPDDTLSPSNGEGRKCLHCATDKTPQWRTGPFGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVMELRRQKEMMRAQQQQQQHLSGDKRK 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2895941 2898104 + Cp4.1LG06g03840.1 Cpe06g00489 471269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00489 334 ProSitePatterns GATA-type zinc finger domain. 250 275 IPR000679 GO:0006355|GO:0043565
Cpe06g00489 334 ProSiteProfiles GATA-type zinc finger domain profile. 244 280 IPR000679 GO:0006355|GO:0043565
Cpe06g00489 334 Gene3D - 244 294 IPR013088 GO:0006355|GO:0008270
Cpe06g00489 334 PIRSF Txn_fac_GATA_plant 40 334 IPR016679 GO:0003677|GO:0005634|GO:0045893
Cpe06g00489 334 PANTHER GATA TRANSCRIPTION FACTOR 27 326 - -
Cpe06g00489 334 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 245 308 - -
Cpe06g00489 334 MobiDBLite consensus disorder prediction 78 107 - -
Cpe06g00489 334 SMART GATA_3 244 294 IPR000679 GO:0006355|GO:0043565
Cpe06g00489 334 CDD ZnF_GATA 249 296 IPR000679 GO:0006355|GO:0043565
Cpe06g00489 334 Pfam GATA zinc finger 250 283 IPR000679 GO:0006355|GO:0043565
Cpe06g00489 334 MobiDBLite consensus disorder prediction 227 247 - -
Cpe06g00489 334 PANTHER GATA TRANSCRIPTION FACTOR 27 326 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe06g00489 Cpe11g00511 CCT
Cpe06g00489 Cpe11g00511 ECH
Cpe06g00489 Cpe07g00206 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01238 Cpe-Chr1:7420741 Cpe06g00489 Cpe-Chr6:2895941 2.63E-44 dispersed
Cpe02g01690 Cpe-Chr2:13929892 Cpe06g00489 Cpe-Chr6:2895941 1.24E-76 dispersed
Cpe03g01098 Cpe-Chr3:9070556 Cpe06g00489 Cpe-Chr6:2895941 1.21E-70 dispersed
Cpe06g00489 Cpe-Chr6:2895941 Cpe11g00511 Cpe-Chr11:2998527 1.31E-78 dispersed
Cpe06g00489 Cpe-Chr6:2895941 Cpe07g00206 Cpe-Chr7:1328410 3.48E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49662 PF00320 GATA 2.00E-15 CL0167 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00489 - - csv:101221905 408.297