Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00492 ATGATGGCTGTCACTTCCGCCTGCAAGGATTCTGCTACCAAGATCAGCAGCTTGGATAATGGGAAGTATGTCAGGTACACACCTGAGCAAGTCGAAGCTCTTGAGAGGCTCTATTATGAATGCCCAAAACCCAGTTCAATGCGCCGCCAGCAGCTCATTCGGGAGTGCCCAATTCTCTCCGACATCGAACCCAAGCAGATCAAAGTTTGGTTCCAAAACCGGAGATGTAGAGAGAAGCAGAGGAAGGAGGCATCCCGTTTGCAGACTGTGAACAGGAAGCTGACGGCTATGAATCGACTTCTAATGGAGGAAAATGATAGGTTGCAGAAACAAGTGTCGCAGCTTGTGTATGAGAACAGCTATTTTCGTCAACAGACCCAGAATGCGACCCTAGCCACCACTGACACAAGTTGTGAGTCTGTGGTGACAAGTGGTCAGCAGAATTTGACTCCGCCGCATCCACCAAAGGATGCCAGTCCCGCAGGACTGTTGTCCATTGCGGAGGAGACTTTAGCAGAGTTTCTTTCAAAGGCTACTGGAACTGCTGTGGAGTGGGTCCAAATGCCTGGGATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCATGGTTGCACTGGAGTTGCTGCTCGTGCATGTGGACTTGTGGGTCTTGAACCCACAAGAGTGGCTGAAATTCTTAAAGATTGGCCTTCTTGGTTTCGCGATTGCCGTGCCGTTGATGTTCTAAATGTCCTATCTACTGGAAATGGAGGAACCATTGAGCTTCTGTACATGCAGCTCTATGCACCTACTACTTTGGCACCTGCTCGTGATTTCTGGCTGCTGCGCTACACATCGATTTTGGAGGATGGTAGTCTTGTGGTCTGTGAAAGATCTCTTAACAATACTCAGAATGGTCCAAGTATGCCTCCAGTACAGAACTTTGTAAGAGCAGAAATGCTATCAAGTGGGTATTTGATAAGACCTTGTGAAGGCGGTGGATCAATAATCCATATGGTTGATCACATGGACTTAGAACCATGGAGCGTGCCTGAAGTGTTGCGGCCATTATACAAGTCATCTACTCTGCTTGCTCAGAAGAACACAATGGCAGCATTACGCTTGTTGAGACAGATTTCACAAGAAGTTTCTCAACCAAATGTTACTGGTTGGGGAAGAAGGCCTGCTGCTCTTCGTGCTCTTAGTCAGAAATTGAGCAGAGGTTTCAACGAAGCAGTAAACGGGTTTACAGACGAGGGATGGTCTTTGTTAGAAAATGATGGCATTGATGATGTTACACTTCTTGTAAACATGTCTCATGGCAAGACAATGATGGGTGCAAATATGTCATATTCTAATGGCTTTCCATCTATGAGCAACGCCGTGCTTTGTGCGAAAGCATCGATGTTATTACAGAATGTCACTCCAGCAATGCTCATTAGGTTCTTGAGAGAACACCGTTCAGAATGGGCAGACAGCAGTATTGATGCTTACTCAGCTGCAGCAATCAAGACCGGCCAGTGTGGTTTACCAGGGTCTCATGCTGGAACTTTTGGGGGTCAGATTATTCTTCCCTTGGCACAAACAGGCTTCATTTGTCTTCAAGGGGGTATCTGCTTGTCAAGCATGGGAAGGGCAATATCCTACGACAAAGCTGTGGCATGGAAGGTTTTGAATGAAGAAGAAAACGCTCACTGTATTTGCTTCATGTTTATGAACTGGTCTTTTGTTTGA 1722 46.57 MMAVTSACKDSATKISSLDNGKYVRYTPEQVEALERLYYECPKPSSMRRQQLIRECPILSDIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLTAMNRLLMEENDRLQKQVSQLVYENSYFRQQTQNATLATTDTSCESVVTSGQQNLTPPHPPKDASPAGLLSIAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPTRVAEILKDWPSWFRDCRAVDVLNVLSTGNGGTIELLYMQLYAPTTLAPARDFWLLRYTSILEDGSLVVCERSLNNTQNGPSMPPVQNFVRAEMLSSGYLIRPCEGGGSIIHMVDHMDLEPWSVPEVLRPLYKSSTLLAQKNTMAALRLLRQISQEVSQPNVTGWGRRPAALRALSQKLSRGFNEAVNGFTDEGWSLLENDGIDDVTLLVNMSHGKTMMGANMSYSNGFPSMSNAVLCAKASMLLQNVTPAMLIRFLREHRSEWADSSIDAYSAAAIKTGQCGLPGSHAGTFGGQIILPLAQTGFICLQGGICLSSMGRAISYDKAVAWKVLNEEENAHCICFMFMNWSFV 573
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2918408 2923191 - Cp4.1LG06g04970.1 Cpe06g00492 471272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00492 573 CDD homeodomain 22 82 IPR001356 GO:0003677
Cpe06g00492 573 CDD START_ArGLABRA2_like 160 375 - -
Cpe06g00492 573 Pfam MEKHLA domain 522 572 IPR013978 -
Cpe06g00492 573 ProSiteProfiles 'Homeobox' domain profile. 17 81 IPR001356 GO:0003677
Cpe06g00492 573 ProSiteProfiles START domain profile. 156 370 IPR002913 GO:0008289
Cpe06g00492 573 SMART HOX_1 19 85 IPR001356 GO:0003677
Cpe06g00492 573 Pfam START domain 166 374 IPR002913 GO:0008289
Cpe06g00492 573 PANTHER CLASS III HD-ZIP PROTEIN CNA1 6 525 - -
Cpe06g00492 573 SUPERFAMILY Homeodomain-like 21 84 IPR009057 -
Cpe06g00492 573 Coils Coil 91 118 - -
Cpe06g00492 573 CDD bZIP 74 113 - -
Cpe06g00492 573 SUPERFAMILY Bet v1-like 165 375 - -
Cpe06g00492 573 Gene3D - 14 88 - -
Cpe06g00492 573 Pfam Homeodomain 22 80 IPR001356 GO:0003677
Cpe06g00492 573 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 523 573 IPR044830 GO:0003700
Cpe06g00492 573 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 6 525 IPR044830 GO:0003700
Cpe06g00492 573 Gene3D - 200 377 IPR023393 -
Cpe06g00492 573 PANTHER CLASS III HD-ZIP PROTEIN CNA1 523 573 - -
Cpe06g00492 573 SMART START_1 165 375 IPR002913 GO:0008289
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe02g00509 Cpe06g00492 CCT
Cpe02g00509 Cpe06g00492 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00509 Cpe-Chr2:2996775 Cpe06g00492 Cpe-Chr6:2918408 0 dispersed
Cpe06g00492 Cpe-Chr6:2918408 Cpe17g00535 Cpe-Chr17:4476077 0 dispersed
Cpe06g00487 Cpe-Chr6:2880183 Cpe06g00492 Cpe-Chr6:2918408 0 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49663 PF01852 START 4.50E-53 CL0209 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00492 K09338 - csv:101218438 1030.39