Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00494 ATGTCAGCAACACAACCATCACAAATCACCCAACCATCCTCCTCTGACACCAACGCCCAATCCAACCCCAACAACAAGCGCGTTCGTGATTCCAGCAAGCACCCACTCTACCGCGGCGTAAGAATGCGCGCTTGGGGCAAATGGGTGTCCGAAATCCGCGAGCCTCGCAAGAAATCCCGCATTTGGTTAGGAACCTTCCCCACACCAGAGATGGCCGCTAGAGCCCACGACGTTGCTGCCTTGTCCATCAAAGGTAATTCCGCTATTCTCAACTTCCCTGAACTCGCTCACTCCCTTCCCCGCCCTGTCTCCTTCGCCCCTCGCGATGTTCAAGCCGCCGCTGCCAAGGCCGCCCACATGGACCCTTTTCAATACTCCACCGACGACTCCGACGAGCTCAGCGAAATCGTCAAGCTGCCTAGTCTCACCACCAATTACCTTAATAACGAGTTCGTCCTCATGGACTCCACCGATGGCTGGGTTTACCCGCCCCCATGGTTACGAACCATGGACGATTGCAGCTACAACCACAACGACGACGAGATGGGAATTGGGGACAGCAATTTCTTATGGGATTATTAA 582 54.81 MSATQPSQITQPSSSDTNAQSNPNNKRVRDSSKHPLYRGVRMRAWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGNSAILNFPELAHSLPRPVSFAPRDVQAAAAKAAHMDPFQYSTDDSDELSEIVKLPSLTTNYLNNEFVLMDSTDGWVYPPPWLRTMDDCSYNHNDDEMGIGDSNFLWDY 193
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2944013 2944594 - Cp4.1LG06g04950.1 Cpe06g00494 471274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00494 193 MobiDBLite consensus disorder prediction 1 35 - -
Cpe06g00494 193 PRINTS Ethylene responsive element binding protein signature 37 48 IPR001471 GO:0003700|GO:0006355
Cpe06g00494 193 PRINTS Ethylene responsive element binding protein signature 59 75 IPR001471 GO:0003700|GO:0006355
Cpe06g00494 193 CDD AP2 35 95 IPR001471 GO:0003700|GO:0006355
Cpe06g00494 193 SMART rav1_2 36 99 IPR001471 GO:0003700|GO:0006355
Cpe06g00494 193 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 9 125 - -
Cpe06g00494 193 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 129 186 - -
Cpe06g00494 193 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 129 186 - -
Cpe06g00494 193 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 9 125 - -
Cpe06g00494 193 MobiDBLite consensus disorder prediction 1 26 - -
Cpe06g00494 193 ProSiteProfiles AP2/ERF domain profile. 36 93 IPR001471 GO:0003700|GO:0006355
Cpe06g00494 193 Gene3D AP2/ERF domain 36 94 IPR036955 GO:0003700|GO:0006355
Cpe06g00494 193 SUPERFAMILY DNA-binding domain 36 94 IPR016177 GO:0003677
Cpe06g00494 193 Pfam AP2 domain 35 85 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01105 Cpe-Chr4:9596314 Cpe06g00494 Cpe-Chr6:2944013 6.19E-08 dispersed
Cpe06g00494 Cpe-Chr6:2944013 Cpe07g01027 Cpe-Chr7:9274513 5.88E-52 dispersed
Cpe18g00407 Cpe-Chr18:5268597 Cpe06g00494 Cpe-Chr6:2944013 3.59E-10 dispersed
Cpe11g00520 Cpe-Chr11:3056639 Cpe06g00494 Cpe-Chr6:2944013 2.23E-11 wgd
Cpe02g00511 Cpe-Chr2:3017728 Cpe06g00494 Cpe-Chr6:2944013 9.76E-88 wgd
Cpe06g00494 Cpe-Chr6:2944013 Cpe07g00216 Cpe-Chr7:1399919 1.41E-12 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49664 PF00847 AP2 4.30E-14 CL0081 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00494 K09286 - csv:101217333 261.151