Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00507 ATGGATTCCGGCAGCCCAAGTTTGCAATCCTCCAGCGGCGGCGAAGAAGATTACGACTCTCATCACCCTTTTCCCCCGCCGCCACCGCCGCCGCCCCCACTTTTCTTCAACCCCAATTCCTACCAAACCCACCTCCTCCCCTCCTCCCCTTTCTACGATTTCCCCTCCGATTACACTTTCAACAACCCTTCCAACGCCGGGACATCTGAACCCGCCGCCGCGGATCCCACCCAAAACCAATTCCCAATTCGCTCATCTGGGGTTTTGCATCCCAAAGCCACCACAAAGAAGAGAACTAGAGCCTCACGGAGAGCCCCCACCACCGTTCTCACAACCGACACCACGAATTTCCGTGCAATGGTGCAAGAGTTCACCGGAATCCCTTCCCCGCCGTTTACCACTGGTGGGTCATCCTATTCCCGCCGATTTGATCTCTTTAACTTGGTTAAAACAACTAGCTCCACACCCTCTATTCTAGAAACTTCTGGATCGGGTCTTTACTCTTCTCGTGTGCCTAAATTCGCGGGCGACGAGGGAGGGACCGAGATGAAGTCCGAGACGGTGACATTGATTCTGGTAAACCTCGCCGGAGTAATGGAGAGGGCCGACGAATCTCTGTTACCTGGTGTCTACAAAGAGGTCGGTGCCGCCTTGCACACCGGTCCTACTGGTCTCGGTTCTTTGACTCTCTTCAGATCCATCGTTCAGGCCTCTTGCTATCCCTTGGCTGCTTATTTGGCCGTGCGCCATAACCGAGCTCATGTCGCTGTTTCAAGAGCATTGAATGGGATTGGCCTTGCATTAGTTGCACCTGCCATCCAGTCCCTCGTCGCAGATTCAACAGATGACCATAACCGTGGTTTGGCTTTTGGATGGCTTCAAACGACTGGCAACTTAGGCTCCATTATTGGCGGGTTGTGTTCAATAATAATAGCTCCAATAACAATTATGGGAATCCCTGGTTGGAGAATTGCATTTCATCTTGTTGGACTAATCAGTGTTGTTGTTGGCATTCTAGGTGTCACAGGTTCATTTCCCTGGTCAGCCTTGTCATTTTTAACAATGTGGTTGGAACTCAAGGGCTTCTCCCATGAGAAGACTGCTTTTCTGATGGGCATGTTTGTGATTGGAAACTCTCTTGGAGGCTTGTTTGGAGGTAAAATGGGAGATATCCTCTCCACACGTTTCCCAGATTCCGGGAGGATTATTCTGGCACAAATCAGCTCAGCGTCAGGCATTCCTCTAGCTGCAGTTCTTCTGCTCTTCTTGCCTGATGGCCCATTTACAGCAGTTCTCCATGGACTAGTCTTGCTCATTGTGGGGTTTTTCATTTCTTGGAATGCTCCAGCTACAAATAATCCTATTTTTGCAGAGATAGTTCCTGAAAAATCTCGGACAAATGTCTATGCTTTAGATCGATCTTTGGAATCTATTTTGTCATCATTTGCTCCTCCTATTGTTGGGATTCTGGCTCAGCATGTCTATGGATATAAGCCCGTTAAGAGAGGATCTAGTGAGACTGAAGAGATTGCCACAGATAGGGGGAATGCAGCATCATTAGCCCGGGCATTGTACACTGCAATAGGAATTCCATTGGCTCTCTGTTGTTTTATATACTCGTTTCTGTATTGCACCTATCCAAGAGATAGAGAACGAGCACGTATGGAAGTTTTAATTGAATCAGAGATGCAACAAATAACTTCTGAATGGCCAACTTCAGGTTCTCCATTCTCTCAAGTTCATTTATCAGAGTCAGGTGAGCTACATTCTAGAGACAGAGAAGTCATTGATATGGACTATAAAGAAGAGGATGATCTAGATTTCGATGACGACGAAAAGACAGCCCTTTATAGCCAGTGGACAATTTCAAATTTTCTCAAACAATAG 1887 47.59 MDSGSPSLQSSSGGEEDYDSHHPFPPPPPPPPPLFFNPNSYQTHLLPSSPFYDFPSDYTFNNPSNAGTSEPAAADPTQNQFPIRSSGVLHPKATTKKRTRASRRAPTTVLTTDTTNFRAMVQEFTGIPSPPFTTGGSSYSRRFDLFNLVKTTSSTPSILETSGSGLYSSRVPKFAGDEGGTEMKSETVTLILVNLAGVMERADESLLPGVYKEVGAALHTGPTGLGSLTLFRSIVQASCYPLAAYLAVRHNRAHVAVSRALNGIGLALVAPAIQSLVADSTDDHNRGLAFGWLQTTGNLGSIIGGLCSIIIAPITIMGIPGWRIAFHLVGLISVVVGILGVTGSFPWSALSFLTMWLELKGFSHEKTAFLMGMFVIGNSLGGLFGGKMGDILSTRFPDSGRIILAQISSASGIPLAAVLLLFLPDGPFTAVLHGLVLLIVGFFISWNAPATNNPIFAEIVPEKSRTNVYALDRSLESILSSFAPPIVGILAQHVYGYKPVKRGSSETEEIATDRGNAASLARALYTAIGIPLALCCFIYSFLYCTYPRDRERARMEVLIESEMQQITSEWPTSGSPFSQVHLSESGELHSRDREVIDMDYKEEDDLDFDDDEKTALYSQWTISNFLKQ 628
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3011929 3017926 - Cp4.1LG06g05110.1 Cpe06g00507 471287

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00507 628 MobiDBLite consensus disorder prediction 1 40 - -
Cpe06g00507 628 PANTHER - 255 339 - -
Cpe06g00507 628 MobiDBLite consensus disorder prediction 62 107 - -
Cpe06g00507 628 PANTHER SPINSTER 340 621 IPR044770 -
Cpe06g00507 628 MobiDBLite consensus disorder prediction 62 85 - -
Cpe06g00507 628 Gene3D MFS general substrate transporter like domains 344 556 IPR036259 -
Cpe06g00507 628 Gene3D MFS general substrate transporter like domains 218 343 IPR036259 -
Cpe06g00507 628 PANTHER - 178 255 - -
Cpe06g00507 628 SUPERFAMILY MFS general substrate transporter 189 549 IPR036259 -
Cpe06g00507 628 PANTHER SPINSTER 255 339 IPR044770 -
Cpe06g00507 628 Pfam Major Facilitator Superfamily 243 340 IPR011701 GO:0022857|GO:0055085
Cpe06g00507 628 PANTHER - 340 621 - -
Cpe06g00507 628 Pfam VQ motif 104 131 IPR008889 -
Cpe06g00507 628 MobiDBLite consensus disorder prediction 23 37 - -
Cpe06g00507 628 PANTHER SPINSTER 178 255 IPR044770 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00507 - - - bhj:120085856 725.702
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe02g00523 Cpe06g00507 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00731 Cpe-Chr1:4248892 Cpe06g00507 Cpe-Chr6:3011929 3.92E-13 dispersed
Cpe06g00507 Cpe-Chr6:3011929 Cpe10g00565 Cpe-Chr10:3315727 0 dispersed
Cpe19g00769 Cpe-Chr19:5873440 Cpe06g00507 Cpe-Chr6:3011929 3.17E-11 dispersed
Cpe02g00524 Cpe-Chr2:3102280 Cpe06g00507 Cpe-Chr6:3011929 1.21E-22 transposed
Cpe02g00523 Cpe-Chr2:3092834 Cpe06g00507 Cpe-Chr6:3011929 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g395 . . . . Bpe02g00101 . . Bma01g02618 . . Cma01g01424 Cma09g00647 . . . Cpe06g00507 . . . . . . . . . . . . . . . Cone4ag1346 Cone7ag1585 . . Lsi04g02346 Csa03g04567 . . . . . . . . . . Sed12g1410 Cmo01g01473 Cmo09g00630 . . . Car09g00574 . Cpe02g00523 Bhi09g02610 Tan01g3960 Cmetu04g1462 . Hepe01g2239 Mch11g0787 . Cla11g01497 Cam11g1553 Cec11g1585 Cco11g1581 Clacu11g1711 Cmu11g1530 Cre11g1946 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001621 1 2 2 2 2 1 4 2 2 2 2 2 3 2 1 4 2 4 4 2 2 2 2 3 3 2 2 2 3 1 68
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00507 Cpe_Chr06 FPKM 39.018982 42.940392 1.666829 1.142209 2.005524 1.655919 1.179207 0.922746 0.573144 0.475279