Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00508 ATGGAAAAAGAAGCCGATTTCTCTCGTTGTGGTTTCATGAGAGGGGTTTTCCAGCGACGGTGCAAATGGTTGAAGAAAACCTCTGTGCATTCATTACCCACAAACAACACCGAACCAGTCGACTTAAAAGTACCCAAAACAGAGAACCCAACAAGGAAGAGCCGGAGCTCTGTTTCCGACGATGCGCCAACAGCCAGAAACTCAGTGGAACAAGATCAAAAGACACCGAAAAAGCCCACTTTGGATCAAGCAAGGCCGTCGATTTCTCAACAAAAGAATCAAAGTCGACGACCTTCCGATGCTGCAAGAAGCTCCACATCGTCCTCCAATGGCTCTTCTGCACAAACCAGAGCGATGAATTCCCAGCAACAATTGACCGAACCCAGAACCCACATCCGAACATCTTTAAGTAATGGCGCGGTTTTGGGTAATTTGAAGCAAGCTGGAGGTGGGAATCTGTCGGCAAACAACAGTCCAAGGCTGAAAGAGATGAACTCAAGTCCAAGACTTGGAGGTAATAACATGGGGAACATAATTCGGAGAAATTCATGTGAATTCCGACAGATTCAAGGCGTGAGAGGTAAATTAGAGCCAGATGTTTTGAAATCCATGGGAAATGAGGCATACAAAAAGGGGAAATATGAAGAAGCATTGGCTTTGTATAACAGAGCAATAGATTTGGATTCAGACAACGCCGTTTACTACAGCAACAAAGGAGCTGCTCTGATTGGCTTAAACCGTTTGATGGAAGCCATTGAAGAATGCAAAAAAGCATTAAAGATTCAGCCTTCTTATCAAAGAGCCCATCAACGTCTAGCCACTATCTACCTCAGAACTGGAGAGCCTGAGAAAGCACTGGATCATATGGAACAATCCGGCCCTTACAGTGACATAAACGACATGAACAAAGCTCGTGCACTTCAGAGCTGCCTGAGTAGGTGTATTGAAGCAAGAAAGTTACAAGAATGGGACACTCTGTTCAAAGAGACCAATTATGCAATTTCCTCTGTTTCTTGTTCAGCTTATAAACTCTATGCCCTGCAAGCTGAGGCATTGTTGAAGCTCCATAGACATTTAGAGGCATATTCCATTTACCAAAAGGGTCAAACCCTGATGGCTAACACTCTAACCAAGTCATTTAGTGTATCTGATAGCGCCCTTATTTTATCCATCGAGGCACAAGTTTACATGACCATGGGCAGGTTTGAGGAAGCAGTGGAAGCAGCTGAAAAATCAACACAGCTTGATCCAACCAACAGGGAAGCAAGTAGAGTGGCAAAATGGGCTAAGTTCATTTCATCAGCTCGATTGAGAGGCAATCTACTTTTCAAGGAATCTAGATTCTCTGAGGCCTGTATTGCATACAGTGAAGGATTAGAAAACGACCCATATAACTCAATTTTGTTATGCAATCGAGCTGCTTGTCGATCGAAGCTCGGGCAGTATGAGAAAGCTGTTGAAGATTGCACTGCAGCTCTCCACGCACAGCCATGTTACAGTAAAGCCAGACTCCGCAGGGCTGATTGCAATGCTAAAATGGAACGATGGGAGGCTTCAATTCAAGATTATGAGGTTTTGATAAGAGAAACACCAGGAAATGAGGAAGTGGGGAGGGCTCTGTTCGAGGCACAGCTTCAGCTCAGAAAGCAGCATGGGGAGGACGTCAAAGACATGAAATTTGGGTCCAATTTGGTGTCTATATCTAGCTACGAGCGGTTTAGACACTTCGTTACTTCTCCTGGGATGTGTGTGGCTTTGTTCTGCAACAAAGGCAACCAAAAACAGGGGTTGGAAGTGTTGGAGCAGGCTTACAAGAGGTTTCCATCAGTGAACTTTCTCAAGGTGGAGATAGAAGATCATCCTTATTTGGCGAAGTTGGAGAAAGTGAGCGCCATTCCAGCTTTTAAGATATACAGAAATGGAAGAATAGTGAAGGAGATTGCAGCCTCTGAATCCCATTCATTAGAGAGCTTAGTGAAGATGTGCAGCAGTTGA 1995 44.51 MEKEADFSRCGFMRGVFQRRCKWLKKTSVHSLPTNNTEPVDLKVPKTENPTRKSRSSVSDDAPTARNSVEQDQKTPKKPTLDQARPSISQQKNQSRRPSDAARSSTSSSNGSSAQTRAMNSQQQLTEPRTHIRTSLSNGAVLGNLKQAGGGNLSANNSPRLKEMNSSPRLGGNNMGNIIRRNSCEFRQIQGVRGKLEPDVLKSMGNEAYKKGKYEEALALYNRAIDLDSDNAVYYSNKGAALIGLNRLMEAIEECKKALKIQPSYQRAHQRLATIYLRTGEPEKALDHMEQSGPYSDINDMNKARALQSCLSRCIEARKLQEWDTLFKETNYAISSVSCSAYKLYALQAEALLKLHRHLEAYSIYQKGQTLMANTLTKSFSVSDSALILSIEAQVYMTMGRFEEAVEAAEKSTQLDPTNREASRVAKWAKFISSARLRGNLLFKESRFSEACIAYSEGLENDPYNSILLCNRAACRSKLGQYEKAVEDCTAALHAQPCYSKARLRRADCNAKMERWEASIQDYEVLIRETPGNEEVGRALFEAQLQLRKQHGEDVKDMKFGSNLVSISSYERFRHFVTSPGMCVALFCNKGNQKQGLEVLEQAYKRFPSVNFLKVEIEDHPYLAKLEKVSAIPAFKIYRNGRIVKEIAASESHSLESLVKMCSS 664
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3027491 3030540 + Cp4.1LG06g05020.1 Cpe06g00508 471288

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00508 664 Pfam TPR repeat 205 242 - -
Cpe06g00508 664 PANTHER INACTIVE TPR REPEAT THIOREDOXIN TTL3-LIKE PROTEIN 4 662 - -
Cpe06g00508 664 Pfam Tetratricopeptide repeat 478 533 - -
Cpe06g00508 664 CDD TRX_family 599 660 - -
Cpe06g00508 664 Pfam Thioredoxin 599 658 IPR013766 -
Cpe06g00508 664 MobiDBLite consensus disorder prediction 28 42 - -
Cpe06g00508 664 ProSiteProfiles TPR repeat profile. 386 419 IPR019734 GO:0005515
Cpe06g00508 664 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 4 662 IPR044534 -
Cpe06g00508 664 SUPERFAMILY TPR-like 434 550 IPR011990 GO:0005515
Cpe06g00508 664 MobiDBLite consensus disorder prediction 56 70 - -
Cpe06g00508 664 ProSiteProfiles TPR repeat profile. 232 265 IPR019734 GO:0005515
Cpe06g00508 664 MobiDBLite consensus disorder prediction 142 175 - -
Cpe06g00508 664 ProSiteProfiles TPR repeat region circular profile. 198 231 - -
Cpe06g00508 664 MobiDBLite consensus disorder prediction 27 130 - -
Cpe06g00508 664 ProSiteProfiles TPR repeat profile. 198 231 IPR019734 GO:0005515
Cpe06g00508 664 SUPERFAMILY Thioredoxin-like 558 648 IPR036249 -
Cpe06g00508 664 SUPERFAMILY TPR-like 198 422 IPR011990 GO:0005515
Cpe06g00508 664 MobiDBLite consensus disorder prediction 80 130 - -
Cpe06g00508 664 SMART tpr_5 342 375 IPR019734 GO:0005515
Cpe06g00508 664 SMART tpr_5 232 265 IPR019734 GO:0005515
Cpe06g00508 664 SMART tpr_5 466 499 IPR019734 GO:0005515
Cpe06g00508 664 SMART tpr_5 386 419 IPR019734 GO:0005515
Cpe06g00508 664 SMART tpr_5 500 533 IPR019734 GO:0005515
Cpe06g00508 664 SMART tpr_5 432 465 IPR019734 GO:0005515
Cpe06g00508 664 SMART tpr_5 198 231 IPR019734 GO:0005515
Cpe06g00508 664 Gene3D Tetratricopeptide repeat domain 197 552 IPR011990 GO:0005515
Cpe06g00508 664 MobiDBLite consensus disorder prediction 149 175 - -
Cpe06g00508 664 Pfam Tetratricopeptide repeat 388 419 IPR013105 -
Cpe06g00508 664 Gene3D Glutaredoxin 559 663 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00508 K09527 DNAJC7; DnaJ homolog subfamily C member 7 - csv:101206173 1018.84
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe02g00525 Cpe06g00508 CCT
Cpe02g00673 Cpe06g00508 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00733 Cpe-Chr1:4258035 Cpe06g00508 Cpe-Chr6:3027491 1.23E-144 dispersed
Cpe06g00508 Cpe-Chr6:3027491 Cpe06g00649 Cpe-Chr6:4037845 9.48E-128 dispersed
Cpe02g00525 Cpe-Chr2:3109436 Cpe06g00508 Cpe-Chr6:3027491 0 wgd
Cpe02g00673 Cpe-Chr2:4227564 Cpe06g00508 Cpe-Chr6:3027491 1.57E-127 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g393 . Blo12g00702 . Bda03g00496 Bpe02g00100 Bpe04g00451 . Bma01g02620 . . Cma01g01421 Cma09g00648 . . . Cpe06g00508 . . . . . . . . . . . . . . . Cone4ag1347 Cone7ag1584 . . Lsi04g02348 Csa04g01848 . . . . Bda11g00760 . . . . . Sed12g1412 Cmo01g01471 Cmo09g00631 . . . Car09g00576 . Cpe02g00525 Bhi09g02612 Tan01g3963 Cmetu07g1933 . Hepe01g2241 Mch11g0789 . Cla11g01498 Cam11g1554 Cec11g1586 Cco11g1582 Clacu11g1712 Cmu11g1531 Cre11g1947 . . Chy07g00705 Cme07g00929
Vvi19g122 . . . . . . . . . . Cma01g01244 Cma09g00815 Car01g01065 Car09g00731 . Cpe06g00508 Cpe02g00673 Bhi09g03502 Tan01g4331 . . . Mch11g1016 . Cla11g01716 Cam11g1785 Cec11g1806 Cco11g1811 Clacu11g1944 Cmu11g1755 Cre11g2163 Cone6ag0188 Cone9ag0214 . . Lsi04g02020 Csa04g02292 Chy07g00029 Cme07g00542 . . . . . . . . . Cmo01g01299 Cmo09g00809 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005323 2 1 2 2 2 0 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00508 Cpe_Chr06 FPKM 20.423077 24.461573 0.0 0.671078 0.0 0.0 0.0 0.0 0.0 0.0