Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00511 ATGGGTTCTCGAGGAAAATTACTATTTGATCTTAATGAACCCCCTGTCGAGGATAATGAAGATAGCGATGGTCTTGTCTTCCAGCCTCAGAAGGCTCAACCATCTTCAAATTCCCATGCTTCAGACTTGTTTCCAGCATCAGGAGGTCCCCAAAGAATATTAAACAACCATGCATTTTCTCATGCATCTTCCGTATCAGGTTTTCAGCCTTTTGTTCGGAGTAATCTTGGTTCTAATCCTGAAATTGGAGAAGAACAAAACAAATTGTCAGATCAAAATTCAAAGACTACATCATCATCTAAGTTAAGTAATGTTCAGACTGCTGCACCTGTGTTGGTTTCAGGTTCTAGAGACACTCAATCAGTGGAAAGGGAAGAAGGAGAATGGTCTGATGCCGAGGGTTCTGCTGATATAAATGGAGTTAGTGTTTTGCATAAACAGTTAAAAGCTTCACAAGAGAAGGGCCTACTTTCTCCTTCCCGCGATTTTTCTGAGAACACTACCAAAATTTCTGATGGTACCATAGATAAAAGTAGTAATCATGTTCCTTCAACTTCCGATCCAGAGCCAAATGATCGTAAAAGCAACAGTATCCTAAATACAGAAAGCAATGTTAAACTTGATACATCAACAGATAGTGTTCAGGAAGACACTGGGTTGCTTCCGAAACAAAGAGAAGTCAAGGGTATTGAAGCAAGTCATGCTCTAAAATGTGCTAATAACCCGGGAAAGAGGAAAATAGATCAACATCTAGAAGCCAAGCTTGGGAAGAAACGTAATAGGCAGACAATGTTTCTTAATTTAGAAGATGTGAAGATGGCTGGGCCTATCAAGACTTCAACGCCTCGAAGGCAAGCATTTCCACCTCCTGTAACCACTCGCATTGTGAAGGAAGTTCATATTGCAACCCAAGTTAATGAACGTGTTGGGGAAAAGCAGGCTAATAAAGACCAGAAACAAGGTGATGTTTCAAGTCATGAAGGAGGCATTTCCTCAGAATCTGGTGAATCAAAATTGGACAGTAATGGTGATATGAGTTCTGGGTTACTAGCTCGGCCAAACAGGCCAAACAATGATGGAGATGTCTCAGCAGAGGCGTCCTTACCACCAATTCCTAGACATGGCTCATGGAAGGTACCTACAGATCCAAGGTTGCAGAGGAATATGCAGGTATCCAATAGGAAACCAGCTATGTCTAATCAAAGTTCTTCTGACCACAAGCAGATGAATAAGAAGCATCTTTCTGCCAAGAAGCAGAATTCTGTCAGTACTCATCAAGACTCATCAGTTGAACGACTTATACGGGAGGTGACCAATGAAAAATTTTGGCATCACCCAGAGGAAACTGAACTCCAGTGTGTTCCTGGTCGGTTTGAATCTGTGGAAGAATACATCAAAGTGTTCGAACCTTTGTTATTTGAGGAATGCCGGGCTCAACTTTACAGTACGTGGGAGGAATTATCTGAATCATTCTCAAGAGATACACATGTGATGGTTCGTGTCAAGAATATTGAAAGGAGGGAAAGAGGATGGTATGATGTAATAGTTCTTCCTGTAAACGAGTGCAAGTGGTCATTCAAGGAAGGCGATGTGGCAGTTCTTTCATGCCCCAGACCTGGATCAGTTCGATCTAAGAGGAACAGCACTATATCTGAGGAGGAGGATGAAGACCCTGAATCTGGTGGACGTGTGGCTGGAACTGTACGAAGACACATTCCCCTTGACACCCGTGATCCTCCAGGGGCTATCCTTCATTTTTATGTTGGGGACTCGTATGATCCTAATAGGATTGAAGAAGATCATATACTTAGAAAATTTCAGACAAAGAATGTTTGGTTTTTAACATTGCTCGGTTCTCTTGCAACAACCCAACGAGAGTATGTCGCCCTGCATGCATTTCGTCGGCTCAATGTGCAGATGCAATCTTCAATCCTTCAGCCTAGTCCTGAGCAATTTCCGAAGTATGAGCAACAATCACCTGCTATGCCCGAGTGTTTCACACAAAATTTTGTTGAGTATCTGCATAGGACCTTCAATGGACCCCAGCTATCTGCAATCCAATGGGCAGCAACTCATACGGCTGCTGGTACAAGCAGCGGGACAGTCAAGAAGCAAGAGCCATGGCCTTTTACACTCGTACAAGGTCCTCCTGGAACAGGTAAGACCCATACAGTTTGGGGAATGCTAAATGTTATACATCTGGTTCAGTATCAGCATTACTATACTTCTTTGCTCAAGAAACTAGCACCAGAAAGCTATAAACAAGCTCATGAGAGCAGCTCAGATCATATCACTACTGGATCCATTGATGAGGTACTCCAAAACATGGACCAAAATCTTTTCCGCACTCTTCCCACACTGTGTCCTAAACCTAGAATGTTAGTGTGTGCACCTTCAAATGCTGCAACAGATGAGCTTCTTGCTCGTGTTCTTGATCGGGGGTTTATTGATGGGGAGATGAAGGTATATCGACCTGATGTGGCTCGAGTTGGTGTTGATTCACAAACTCGTGCTGCTCAAGCAGTTTCAGTCGAGCGTAGAACAGAACAACTTTTGGTCAAAAGTCGAGATGAAATCTTTAGATGGATGCACCAGCTAAAGGTTCGTGAAAATCAATTATCTCAACAAATCAGTAATCTTCAGAGAGAACTCAATGTTGCTGCAGCTGCCGTCCGTTCTCAAGGATCTGTTGGTGTTGACCCTGATGTTCTGGTAGCTCGTGACCAAAATAGAGATGCATTGTTGCAAAACCTTGCTGCTGTTATAGAAGGTAGGGATAAAATTCTAGTTGAGATGTCACGCCTTGTTATTTTAGAAAGCAGGTTTCGATCTAACAGCAATTTCAATATGGAGGATGCACGAGCTAGTCTTGAGGCAAGTTTTGCCAACGAGGCTGAGATAGTTTTCACTACAGTATCAAGCAGTGGTCGCAAATTATTTTCTAGACTTTCTCATGGTTTTGACATGGTAGTTATTGATGAGGCAGCCCAAGCCAGTGAGGTAGCTGTTCTTCCACCGCTTTCTCTTGGTGCAGCAAGAGGGGGATCTGTTTCATATCAAAATACTCATGAAGCACAATTTTGTCTTCGTATTTATGAACATCTTCAAAAGACCGTGAAGTCTTCAGGCATAGGCAAAGTTTCTGTCGGTATAATAACACCATACAAGCTCCAATTGAAGTGCCTCCAACGTGAGTTTGAGGAGGTTCTGATCTCTGAAGAAGGGAAGGATCTGTATATTAATACTGTTGATGCTTTCCAAGGTCAAGAAAGGGACGTGATTATCATGTCTTGTGTGCGTGCCTCCAACCATGGCGTTGGCTTTGTTGCAGATATTCGTCGAATGAATGTAGCACTGACTCGTGCCAGGAGGGCCCTGTGGGTAATGGGTAATGCTAATGCTTTGATTCAGTCTGAAGATTGGGCTGCGCTGATCAATGATGCGAAGTCAAGGAACTGTTACATGGACATGGAATCTCTCCCCAAGGACTTCCTCGGACAGAAGGGGTCTACTCAATCTACTTTGCCTGGGAAGAACTCTTCCAACATTAGGGGTCTGAGATCAGTTCTTCCAAGACATAGGACTCTGGATATACACGTGGAGTCCAGGTCTGGAACACCATCGGAAGATGATGAGAAATCAAACTCTGCGGTAATCCCTAGGAATGGAAATTACCGGCCTTCTAAGGCGGCGGTAGAGAATTCCCCAGAAGACTTTGATCAGTCAGGTGACAAATTGAGAGATACTTGGCATTATGGTATGCACAAAAGACAAAGTTCTGCTGGGACTATTGGGAAGAGAGATATTTAA 3810 43.25 MGSRGKLLFDLNEPPVEDNEDSDGLVFQPQKAQPSSNSHASDLFPASGGPQRILNNHAFSHASSVSGFQPFVRSNLGSNPEIGEEQNKLSDQNSKTTSSSKLSNVQTAAPVLVSGSRDTQSVEREEGEWSDAEGSADINGVSVLHKQLKASQEKGLLSPSRDFSENTTKISDGTIDKSSNHVPSTSDPEPNDRKSNSILNTESNVKLDTSTDSVQEDTGLLPKQREVKGIEASHALKCANNPGKRKIDQHLEAKLGKKRNRQTMFLNLEDVKMAGPIKTSTPRRQAFPPPVTTRIVKEVHIATQVNERVGEKQANKDQKQGDVSSHEGGISSESGESKLDSNGDMSSGLLARPNRPNNDGDVSAEASLPPIPRHGSWKVPTDPRLQRNMQVSNRKPAMSNQSSSDHKQMNKKHLSAKKQNSVSTHQDSSVERLIREVTNEKFWHHPEETELQCVPGRFESVEEYIKVFEPLLFEECRAQLYSTWEELSESFSRDTHVMVRVKNIERRERGWYDVIVLPVNECKWSFKEGDVAVLSCPRPGSVRSKRNSTISEEEDEDPESGGRVAGTVRRHIPLDTRDPPGAILHFYVGDSYDPNRIEEDHILRKFQTKNVWFLTLLGSLATTQREYVALHAFRRLNVQMQSSILQPSPEQFPKYEQQSPAMPECFTQNFVEYLHRTFNGPQLSAIQWAATHTAAGTSSGTVKKQEPWPFTLVQGPPGTGKTHTVWGMLNVIHLVQYQHYYTSLLKKLAPESYKQAHESSSDHITTGSIDEVLQNMDQNLFRTLPTLCPKPRMLVCAPSNAATDELLARVLDRGFIDGEMKVYRPDVARVGVDSQTRAAQAVSVERRTEQLLVKSRDEIFRWMHQLKVRENQLSQQISNLQRELNVAAAAVRSQGSVGVDPDVLVARDQNRDALLQNLAAVIEGRDKILVEMSRLVILESRFRSNSNFNMEDARASLEASFANEAEIVFTTVSSSGRKLFSRLSHGFDMVVIDEAAQASEVAVLPPLSLGAARGGSVSYQNTHEAQFCLRIYEHLQKTVKSSGIGKVSVGIITPYKLQLKCLQREFEEVLISEEGKDLYINTVDAFQGQERDVIIMSCVRASNHGVGFVADIRRMNVALTRARRALWVMGNANALIQSEDWAALINDAKSRNCYMDMESLPKDFLGQKGSTQSTLPGKNSSNIRGLRSVLPRHRTLDIHVESRSGTPSEDDEKSNSAVIPRNGNYRPSKAAVENSPEDFDQSGDKLRDTWHYGMHKRQSSAGTIGKRDI 1269
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3039098 3048054 - Cp4.1LG06g05120.1 Cpe06g00511 471291

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00511 1269 MobiDBLite consensus disorder prediction 304 430 - -
Cpe06g00511 1269 MobiDBLite consensus disorder prediction 1238 1254 - -
Cpe06g00511 1269 CDD SF1_C_Upf1 1014 1149 IPR041679 -
Cpe06g00511 1269 Gene3D - 1019 1155 IPR027417 -
Cpe06g00511 1269 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN-RELATED 1012 1233 - -
Cpe06g00511 1269 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN-RELATED 1 1013 - -
Cpe06g00511 1269 MobiDBLite consensus disorder prediction 26 44 - -
Cpe06g00511 1269 MobiDBLite consensus disorder prediction 1199 1216 - -
Cpe06g00511 1269 MobiDBLite consensus disorder prediction 1 225 - -
Cpe06g00511 1269 Pfam AAA domain 683 1013 IPR041677 GO:0004386
Cpe06g00511 1269 PANTHER DNA2/NAM7 HELICASE FAMILY 1 1013 IPR045055 -
Cpe06g00511 1269 MobiDBLite consensus disorder prediction 383 405 - -
Cpe06g00511 1269 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 708 1161 IPR027417 -
Cpe06g00511 1269 MobiDBLite consensus disorder prediction 539 564 - -
Cpe06g00511 1269 Coils Coil 863 890 - -
Cpe06g00511 1269 Gene3D - 601 1017 IPR027417 -
Cpe06g00511 1269 MobiDBLite consensus disorder prediction 324 353 - -
Cpe06g00511 1269 Pfam AAA domain 1017 1132 IPR041679 -
Cpe06g00511 1269 MobiDBLite consensus disorder prediction 1165 1184 - -
Cpe06g00511 1269 PANTHER DNA2/NAM7 HELICASE FAMILY 1012 1233 IPR045055 -
Cpe06g00511 1269 MobiDBLite consensus disorder prediction 153 218 - -
Cpe06g00511 1269 MobiDBLite consensus disorder prediction 1199 1269 - -
Cpe06g00511 1269 MobiDBLite consensus disorder prediction 53 118 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00511 - - K10706 cmos:111446131 1852.03
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00511 Cpe-Chr6:3039098 Cpe12g00526 Cpe-Chr12:5413933 9.52E-30 dispersed
Cpe02g00528 Cpe-Chr2:3122424 Cpe06g00511 Cpe-Chr6:3039098 7.43E-166 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g383 . Blo12g00698 . Bda03g00500 Bpe02g00097 Bpe04g00455 . Bma01g02622 . . Cma01g01416 . . . . Cpe06g00511 . . . . . . . . . . . . . . . Cone4ag1352 Cone7ag1580 . . . Csa04g01843 . . . . . . . . . . Sed06g0283 Cmo01g01466 . . . . Car09g00579 . . Bhi09g02618 Tan01g3970 Cmetu10g0738 . Hepe01g2246 Mch11g0793 . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006505 1 1 2 2 2 0 2 1 1 1 1 1 2 0 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00511 Cpe_Chr06 FPKM 14.968704 15.736913 14.280883 14.548899 22.896749 19.637606 21.821096 0.133553 0.467583 0.370152