Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00519 ATGGCTACCTCTGTCCATAATCGTCAGTTTCCCCATTTGGATTCCGCCATTCGTGGCTGTAATTTTCCCTCTAATCCGGAGTTCTCCGTGCCCAAGAAGACGGCGGCAATGGAGAACGCCGGCGATGATGACTTCTCCAGTGACGACGACAACGACTCCGATTTCAACGACTTGATTCGTAAAGGGTTGAGCGAATTGGAGCCGTCGATTCACGATCCGAGAGATTCCGGCACGGCGGATGGTTGGATTGAGAGAAATGCGTCCATGGTTCGTCTTACGGGTAAACATCCTTTCAATTCGGAGCCGCCGTTACCCCGTTTGATGCACCATGGGTTTATCACTCCGGTTCCGCTTCATTACGTCCGTAACCACGGCCCGGTCCCTAAGGCGAATTGGAACGATTGGACCGTCGAGATTTGCGGTTTAGTGAAAAAACCAACCCGGTTCACTATGGACCAACTCGTTAACGATTTCCGTAGCCGGGAATTTCCCGTCACACTCGTCTGCGCCGGTAACCGCCGGAAGGAACAGAATATGGTTAAGAAAACCATCGGATTCAACTGGGGCGGCGGCGGAATCTCCACGTCGGTCTGGCGAGGGGTCCCACTCCGAGACGTGTTAAAGCACTGTGGAATCTTCAGCCGTAAGAAAGGGGCCCTCAATGTCTGCTTTGAAGGAGCAGAGTGTTTGCCCGGCGGCGGTGGGTCCAAGTACGGCACTAGCCTGAGAAAGGAAGTAGCCATGGACCCAGGTAGAGATATAATGCTAACGTATATGCAAAACGGCGATCTGTTAGCACCGGACCACGGATTTCCCGTTCGGGTCATCACGCCGGGATTCATCGGCGGCCGGATGGTCAAATGGCTAAAACGCATTATCGTAACCACAANTTTCACTTATAAACGACTGGAACTCGAACTAAACCATCTTCACATGGCTACCTCTGTCCATAATCGTCAGTTTCCCCATTTGGATTCCGCCATTCGTGGCTGTAATTTTCCCTCTAATCCGGAGTTCTCCGTGCCCAAGAAGACGGCGGCAATGGAGAACGCCGGCGATGATGACTTCTCCAGTGACGACGACAACGACTCCGATTTCAACGACTTGATTCGAAAAGGGTTGAGCGAATTGGAGCCGTCGATTCACGATCCGAGAGATTCCGGCACGGCGGATGGTTGGATTGAGAGAAATGCGTCCATGGTTCGTCTTACGGGTAAACATCCTTTCAATTCGGAGCCGCCGTTACCCCGTTTGATGCACCATGGGTTCATCACTCCGGTTCCGCTTCATTACGTCCGTAACCACGGCCCGGTCCCTAAGGCGAATTGGAACGATTGGACCGTCGAGATTTGCGGTTTAGTGAAAAAACCAACCCGGTTCACTATGGACCAACTCGTTAACGATTTCCGTAGCCGGGAATTTCCCGTCACACTCGTCTGCGCCGGTAACCGCCGGAAGGAACAGAATATGGTTAAGAAAACCATCGGATTCAACTGGGGCGGCGGCGGAATCTCCACGTCGGTCTGGCGAGGGGTCCCACTCCGAGACGTGTTAAAGCACTGTGGAATCTTCAGCAGTAAGAAAGGGGCCCTCAATGTCTGCTTTGAAGGAGCAGAGTGTTTGCCCGGCGGCGGTGGGTCCAAGTACGGCACTAGCCTGAGAAAGGAAGTAGCCATGGACCCAGGTAGAGATATAATGCTAACGTATATGCAAAACGGCGATCTGTTAGCACCGGACCACGGATTTCCCGTTCGGATCATCACGCCGGGATTCATCGGCGGCCGGATGGTCAAATGGCTAAAACGCATTATCGTAACCACAAAAGAATCAGATAGTTATTACCATTACAGAGACAACAAAGTCCTCCCCTCCCATGTCGATGCAGAATTGGCAAACGCCGAAGCTTGGTGGTACAAGCCGGAGTGTATTATCAGCGAACTGAACATAAACTCTGTTATAACCACACCATGCCACGAGGAAATCCTGCCGATAAACTCATGGACTACACAACGGCCGTATACGTTAAGAGGATATGCATATTCCGGAGGGGGGAAGAAAGTGACACGAGTGGAGGTGACTCTCGACGGCGGAGAATCATGGCATCTCTCCGATTTGAACAGCCCGGAGAAGGCTACAAAATACGGGAAGTATTGGTGTTGGTGTTTCTGGTCGCTGGAGGTGGAGGTTCTTGACCTGCTTGCGGCGAAGGAAATTGCAGTCCGCGCTTGGGATGAGACGTTCAACACTCAGCCGGAGAAGCTCATATGGAATCTCATGGGAATGATGAACAATTGTTGGTTTCGAGTCAAAACCAATATGTGCAAGCCGCACAAGGGAGAGATCGGAATCGTTTTCGAACACCCAACGTTGCCGGGAAACCAGTCCGGCGGATGGATGGCTAAAGAGAGACACCTCGAGATATCCACCGAAAACAACCAAACCATGAAGAAGAGTATCTCATCGCCGTTCATCAACACCGCGTCAAACATATACTCAATGTCCGATGTCAAAACCCACAACTCCGACCAATCCGCTTGGATCGTCGTCCACGGCCATGTCTACGACTGCACCCGCTTCCTCAAGGATCATCCCGGCGGCACCGACAGCATTCTCATCAACGCCGGTACCGACTGCACGGAAGAATTCGACGCAATTCACTCCGACAAAGCGAAAAAAATGCTCGAGGATTACCGAATCGGCGAGTTGATCACTACCGGCTACGCTTCGGATTCGTCGCCTGACACCTCTGTTCATGGGTCAGTTAATCATAATATCCCCCATTTAGCTCCAATCACGGAGACGCGGCGCGTGGCTTTAAACCCGCGTGAGAAAATCCCCTGCAAATTGATTTCCAAAACGGCAATCTCCCACGACGTTAGACGGTTGAGATTCGCTCTGCCATTAGAGGATCAAGCGCTTGGATTACCGGTGGGTAAACACGTATTCCTCTGCGCTAACATAGACGGCAAGCTATGCATGAGAGCCTACACGCCCACCAGCGGCATCCACCATGTGGGTTACTTCGAATTGGTTGTCAAAATCTACTTCAAAAACGCGCACCCCAAATTCCCCAACGGCGGGCTCATGTCGCAGCATTTGGACTCGCTCCCACTCGGATCCGAAATCGAAGTGAAAGGCCCATTGGGGCACATCGAATACACCGGCCGCGGCCACTTCTTAGTCGACGGCAAGCAAAAGAAGGCCAAGAAGCTAGCTATGTTAGCCGGCGGAACGGGCATAACGCCGATTTTTCAAGTGGCGCAGGCGATTCTGAAGGACCCAGAGGATGAAACGGAGATGTTCTTGGTGTATGCGAACCGAACGGAGAATGATATCTTGATGAGGGACGAGCTGGATGAATGGAGTAGGAGTGACAAGAGGTTCAATGTGTGGTATGTGGTGCAAGAGAGTGTACGAGAAGGGTGGGAGTATAGTGTCGGCGTGGTGTCGGAGAGTATCATGAGGGAGCATCTTCCGTCCGCGTCGGCCGATTCGTTGGCGTTAGCTTGTGGACCGCCGCCGATGATTAAGTTTGCTGTGCAACCCAATTTGGAGAAGATGAATTACGACACCGCCGATTCGTTGTTGGTGTTTTGA 3597 52.04 MATSVHNRQFPHLDSAIRGCNFPSNPEFSVPKKTAAMENAGDDDFSSDDDNDSDFNDLIRKGLSELEPSIHDPRDSGTADGWIERNASMVRLTGKHPFNSEPPLPRLMHHGFITPVPLHYVRNHGPVPKANWNDWTVEICGLVKKPTRFTMDQLVNDFRSREFPVTLVCAGNRRKEQNMVKKTIGFNWGGGGISTSVWRGVPLRDVLKHCGIFSRKKGALNVCFEGAECLPGGGGSKYGTSLRKEVAMDPGRDIMLTYMQNGDLLAPDHGFPVRVITPGFIGGRMVKWLKRIIVTTXFTYKRLELELNHLHMATSVHNRQFPHLDSAIRGCNFPSNPEFSVPKKTAAMENAGDDDFSSDDDNDSDFNDLIRKGLSELEPSIHDPRDSGTADGWIERNASMVRLTGKHPFNSEPPLPRLMHHGFITPVPLHYVRNHGPVPKANWNDWTVEICGLVKKPTRFTMDQLVNDFRSREFPVTLVCAGNRRKEQNMVKKTIGFNWGGGGISTSVWRGVPLRDVLKHCGIFSSKKGALNVCFEGAECLPGGGGSKYGTSLRKEVAMDPGRDIMLTYMQNGDLLAPDHGFPVRIITPGFIGGRMVKWLKRIIVTTKESDSYYHYRDNKVLPSHVDAELANAEAWWYKPECIISELNINSVITTPCHEEILPINSWTTQRPYTLRGYAYSGGGKKVTRVEVTLDGGESWHLSDLNSPEKATKYGKYWCWCFWSLEVEVLDLLAAKEIAVRAWDETFNTQPEKLIWNLMGMMNNCWFRVKTNMCKPHKGEIGIVFEHPTLPGNQSGGWMAKERHLEISTENNQTMKKSISSPFINTASNIYSMSDVKTHNSDQSAWIVVHGHVYDCTRFLKDHPGGTDSILINAGTDCTEEFDAIHSDKAKKMLEDYRIGELITTGYASDSSPDTSVHGSVNHNIPHLAPITETRRVALNPREKIPCKLISKTAISHDVRRLRFALPLEDQALGLPVGKHVFLCANIDGKLCMRAYTPTSGIHHVGYFELVVKIYFKNAHPKFPNGGLMSQHLDSLPLGSEIEVKGPLGHIEYTGRGHFLVDGKQKKAKKLAMLAGGTGITPIFQVAQAILKDPEDETEMFLVYANRTENDILMRDELDEWSRSDKRFNVWYVVQESVREGWEYSVGVVSESIMREHLPSASADSLALACGPPPMIKFAVQPNLEKMNYDTADSLLVF 1198
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3100083 3104069 + Cp4.1LG06g05180.1 Cpe06g00519 471299

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00519 1198 Gene3D - 1049 1198 IPR039261 -
Cpe06g00519 1198 PRINTS Cytochrome B5 signature 853 863 IPR001199 -
Cpe06g00519 1198 PRINTS Cytochrome B5 signature 863 877 IPR001199 -
Cpe06g00519 1198 PRINTS Cytochrome B5 signature 878 885 IPR001199 -
Cpe06g00519 1198 PRINTS Cytochrome B5 signature 890 902 IPR001199 -
Cpe06g00519 1198 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 862 872 IPR001709 GO:0016491
Cpe06g00519 1198 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 994 1001 IPR001709 GO:0016491
Cpe06g00519 1198 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 1072 1091 IPR001709 GO:0016491
Cpe06g00519 1198 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 1098 1107 IPR001709 GO:0016491
Cpe06g00519 1198 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 1110 1121 IPR001709 GO:0016491
Cpe06g00519 1198 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 1142 1158 IPR001709 GO:0016491
Cpe06g00519 1198 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 1166 1174 IPR001709 GO:0016491
Cpe06g00519 1198 SMART Cyt_b5_2 831 903 IPR001199 -
Cpe06g00519 1198 PRINTS Cytochrome B5 reductase signature 973 984 - -
Cpe06g00519 1198 PRINTS Cytochrome B5 reductase signature 994 1001 - -
Cpe06g00519 1198 PRINTS Cytochrome B5 reductase signature 1039 1053 - -
Cpe06g00519 1198 PRINTS Cytochrome B5 reductase signature 1072 1091 - -
Cpe06g00519 1198 PRINTS Cytochrome B5 reductase signature 1110 1121 - -
Cpe06g00519 1198 PRINTS Cytochrome B5 reductase signature 1166 1174 - -
Cpe06g00519 1198 PANTHER NADH-CYTOCHROME B5 REDUCTASE 361 1198 IPR001834 GO:0016491
Cpe06g00519 1198 PANTHER NADH-CYTOCHROME B5 REDUCTASE 50 289 IPR001834 GO:0016491
Cpe06g00519 1198 SUPERFAMILY Oxidoreductase molybdopterin-binding domain 383 644 IPR036374 -
Cpe06g00519 1198 Gene3D - 824 904 IPR036400 -
Cpe06g00519 1198 MobiDBLite consensus disorder prediction 344 363 - -
Cpe06g00519 1198 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 859 866 IPR018506 GO:0020037
Cpe06g00519 1198 Gene3D - 387 636 IPR036374 -
Cpe06g00519 1198 Gene3D - 76 312 IPR036374 -
Cpe06g00519 1198 CDD cyt_b5_reduct_like 947 1198 - -
Cpe06g00519 1198 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 942 1054 IPR017927 GO:0016491
Cpe06g00519 1198 ProSitePatterns Eukaryotic molybdopterin oxidoreductases signature. 452 487 IPR022407 GO:0043546
Cpe06g00519 1198 Pfam Oxidoreductase FAD-binding domain 947 1053 IPR008333 -
Cpe06g00519 1198 CDD eukary_NR_Moco 386 771 - -
Cpe06g00519 1198 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 828 903 IPR001199 -
Cpe06g00519 1198 MobiDBLite consensus disorder prediction 15 59 - -
Cpe06g00519 1198 SUPERFAMILY Oxidoreductase molybdopterin-binding domain 72 310 IPR036374 -
Cpe06g00519 1198 Gene3D - 646 822 - -
Cpe06g00519 1198 ProSitePatterns Eukaryotic molybdopterin oxidoreductases signature. 141 176 IPR022407 GO:0043546
Cpe06g00519 1198 Pfam Mo-co oxidoreductase dimerisation domain 643 772 IPR005066 GO:0016491|GO:0030151
Cpe06g00519 1198 PANTHER NITRATE REDUCTASE 50 289 - -
Cpe06g00519 1198 PANTHER NITRATE REDUCTASE 361 1198 - -
Cpe06g00519 1198 SUPERFAMILY Riboflavin synthase domain-like 934 1054 IPR017938 -
Cpe06g00519 1198 Pfam Cytochrome b5-like Heme/Steroid binding domain 833 902 IPR001199 -
Cpe06g00519 1198 Pfam Oxidoreductase molybdopterin binding domain 124 296 IPR000572 -
Cpe06g00519 1198 Pfam Oxidoreductase molybdopterin binding domain 435 614 IPR000572 -
Cpe06g00519 1198 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 1041 1191 IPR039261 -
Cpe06g00519 1198 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 828 905 IPR036400 -
Cpe06g00519 1198 PRINTS Eukaryotic molybdopterin domain signature 401 415 IPR008335 GO:0016491
Cpe06g00519 1198 PRINTS Eukaryotic molybdopterin domain signature 423 439 IPR008335 GO:0016491
Cpe06g00519 1198 PRINTS Eukaryotic molybdopterin domain signature 476 487 IPR008335 GO:0016491
Cpe06g00519 1198 PRINTS Eukaryotic molybdopterin domain signature 487 499 IPR008335 GO:0016491
Cpe06g00519 1198 PRINTS Eukaryotic molybdopterin domain signature 502 517 IPR008335 GO:0016491
Cpe06g00519 1198 PRINTS Eukaryotic molybdopterin domain signature 560 576 IPR008335 GO:0016491
Cpe06g00519 1198 PRINTS Eukaryotic molybdopterin domain signature 577 590 IPR008335 GO:0016491
Cpe06g00519 1198 PRINTS Eukaryotic molybdopterin domain signature 593 606 IPR008335 GO:0016491
Cpe06g00519 1198 PRINTS Eukaryotic molybdopterin domain signature 644 656 IPR008335 GO:0016491
Cpe06g00519 1198 PRINTS Eukaryotic molybdopterin domain signature 675 689 IPR008335 GO:0016491
Cpe06g00519 1198 PRINTS Eukaryotic molybdopterin domain signature 689 701 IPR008335 GO:0016491
Cpe06g00519 1198 PRINTS Eukaryotic molybdopterin domain signature 716 726 IPR008335 GO:0016491
Cpe06g00519 1198 PRINTS Eukaryotic molybdopterin domain signature 741 753 IPR008335 GO:0016491
Cpe06g00519 1198 PRINTS Eukaryotic molybdopterin domain signature 754 767 IPR008335 GO:0016491
Cpe06g00519 1198 Pfam Oxidoreductase NAD-binding domain 1073 1180 IPR001433 GO:0016491
Cpe06g00519 1198 SUPERFAMILY E set domains 646 771 IPR014756 -
Cpe06g00519 1198 Gene3D Translation factors 934 1048 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00519 K10534 NR; nitrate reductase (NAD(P)H) [EC:1.7.1.1 1.7.1.2 1.7.1.3] - csv:101216001 1541.55
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g02024 Cpe06g00519 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g02024 Cpe-Chr1:17228582 Cpe06g00519 Cpe-Chr6:3100083 1.70E-125 dispersed
Cpe01g02564 Cpe-Chr1:20880086 Cpe06g00519 Cpe-Chr6:3100083 6.43E-28 dispersed
Cpe06g00519 Cpe-Chr6:3100083 Cpe13g00591 Cpe-Chr13:5789659 5.96E-64 dispersed
Cpe06g00519 Cpe-Chr6:3100083 Cpe13g00590 Cpe-Chr13:5782089 4.75E-83 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g325 . . . . . . . . Cmo04g02441 Cmo15g00727 . Cma09g00664 . . . Cpe06g00519 . . . . . . . . . . . . . . . . . . Cone20ag0466 Lsi04g02366 Csa04g01830 . . Blo17g00195 Blo18g00197 . Bda13g01500 Bpe02g01621 Bpe14g00366 Bma01g00839 Bma02g00239 Sed04g0506 . Cmo09g00648 . . Car04g02252 Car09g00590 Cpe01g02024 . Bhi09g02640 Tan01g3984 Cmetu09g0993 . Hepe01g2257 Mch11g0805 . Cla11g01515 Cam11g1575 Cec11g1604 Cco11g1602 Clacu11g1730 Cmu11g1548 Cre11g1965 . . Chy07g00682 Cme07g00892
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000829 1 3 2 3 2 2 4 3 3 3 3 3 4 2 3 6 3 1 4 3 5 4 3 3 3 4 3 3 3 1 90
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00519 Cpe_Chr06 FPKM 0.201661 0.0 0.0 0.103488 1.151481 0.402587 1.154242 0.813584 0.613529 0.440609