Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00529 ATGGAAGCTCTGTGGAATTTAGAAGACAAATGGAAGCTCTCAACGCAACAAGCCTTCATTCTCTTAACGTGCACGGCGGTCGCCGTCCTAGGGTTTTGCGCGGCGGCGTGGGCGAAACAGAGGAAGTGCGAGAAGACAGAGCGCCGACAGACGAAGGCGGTGGAGAGGTGGTGGTGGAAGGGGGCAGCGGATACGCGGAAGGTGAGCGGCGGCGGAGAGACGCCGGTGCGGCTGTTGGGCGGCGAAGGGGAAGGGGAAGATTTCGGAAGCCGGAATTCGACGGCGGCGGTGTGGCAACGGCCGATTTTAATGGGGGAAAAGTGTGAGATGCTGAAATACAGTGGGCTTATTCTGTACGACGAAAGGGGAAGATTGCTGCAGGATCAAATTGCCGCCATGGAAAACGGTTACAAGGTGCTGCTTCGACGGAGACGGTATAATAGTAAAAACGAGGTTGAAGGATCTACTCTAATGTCCTTCGTCTTTTATGGGAATCTTCAAAAAGAGGTGTAA 513 54.19 MEALWNLEDKWKLSTQQAFILLTCTAVAVLGFCAAAWAKQRKCEKTERRQTKAVERWWWKGAADTRKVSGGGETPVRLLGGEGEGEDFGSRNSTAAVWQRPILMGEKCEMLKYSGLILYDERGRLLQDQIAAMENGYKVLLRRRRYNSKNEVEGSTLMSFVFYGNLQKEV 170
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3175497 3177148 - Cp4.1LG06g05280.1 Cpe06g00529 471309

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00529 170 PANTHER F2P16.13 PROTEIN-RELATED 86 138 - -
Cpe06g00529 170 PANTHER F2P16.13 PROTEIN-RELATED 1 55 - -
Cpe06g00529 170 PANTHER TRANSMEMBRANE PROTEIN 1 55 - -
Cpe06g00529 170 PANTHER TRANSMEMBRANE PROTEIN 86 138 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00529 - - - cmax:111477103 303.523
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g02139 Cpe-Chr1:18025924 Cpe06g00529 Cpe-Chr6:3175497 1.27E-07 dispersed
Cpe06g00529 Cpe-Chr6:3175497 Cpe09g01152 Cpe-Chr9:9818983 2.67E-06 dispersed
Cpe06g00529 Cpe-Chr6:3175497 Cpe20g00106 Cpe-Chr20:558394 2.06E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g24 Blo03g00710 . . . . . . . . . . . . Car09g00599 Sed04g2498 Cpe06g00529 . Bhi09g03571 Tan01g4249 Cmetu07g0378 . Hepe01g1469 . . Cla11g01681 . Cec11g1772 Cco11g1773 Clacu11g1906 Cmu11g1717 Cre11g2130 . . . . Lsi04g01976 . . . . . . . Bpe11g00437 . . . . . Cmo09g00660 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012748 1 2 1 0 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00529 Cpe_Chr06 FPKM 7.300045 7.489264 8.662879 9.639263 9.893102 11.1895 10.70231 8.968229 8.120005 8.079377