Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00530 ATGATTATGTCTGGAAGAAATCGAGGACCACCGATGCCACTAAATGGTGTGCCTCACGGTGGACTACCACCTGGTCGCGAACCTCATTTTGGCAGAGGCCTTGGGCCAGTGCCACATCCAGCGCTTCTTGAGGAAATCAGAGAATCACAGTATGGGATGCATCCAGGATCCCTTCCTCCACACCCTGCAATGATCGAGGAGCGTCTTGCTGCCCAACATCAGGATATCCAAGCTCTTCTTCTCGACAACCAGAGGCTAGCTGCCACCCATGTTGCTCTTAAGCAGGAACTAGAAGCAGCCCAGCATGAGTTGCAACGCATGGCTCATGTTGCTGACTCCTTGCATGAAGAAAGGGACATTCAGATGAGAGAATTATATGAAAAATCAGTAAGACTAGAAGTTGATCTGCGAGGAGTTGAGACTATGCGAGCAGAGCTTCTTCAAGTTCATTCTGATGTCAAGGAATTAACTGTTGCAAGGCAGGAGCTCACTGGTCAAGTACAAGCAATGTCACAAGATCTAACTAGAATGACTGCAGATTTGCAGCAGGTCCCCGCTTTGAAGGCAGAAATTGAAACTGTGAAGCAGGAATTACATCGTGCTAGAGTTGCAATTGAGTATGAAAAGAAGGGATATGCAGAGAATTATGAACACGGTCAGGTTATGGAGAAGAAACTGGTTTCAATGGCTCGGGAGTTGGAGAAACTTAGAGCTGAGGTTGCTAATGCAGAGAAGAGAGCTCATGCTTCTGCTGCTGCTGTTGGAAATGCTGCTGCTGGGTACGGTACAAATTATGGCAATGCTGATGCTGGATATGCGGGAAATCCATATTCTTCGAGTTATGGCTTGAACTCCGTGCAGTCTGGTACCGATGGTTATCCTCCATATGGACCTGGATCTGTTCCCTGGGGTGCATATGACATGCAACGGGCTCAAGGACATAGATAG 948 47.68 MIMSGRNRGPPMPLNGVPHGGLPPGREPHFGRGLGPVPHPALLEEIRESQYGMHPGSLPPHPAMIEERLAAQHQDIQALLLDNQRLAATHVALKQELEAAQHELQRMAHVADSLHEERDIQMRELYEKSVRLEVDLRGVETMRAELLQVHSDVKELTVARQELTGQVQAMSQDLTRMTADLQQVPALKAEIETVKQELHRARVAIEYEKKGYAENYEHGQVMEKKLVSMARELEKLRAEVANAEKRAHASAAAVGNAAAGYGTNYGNADAGYAGNPYSSSYGLNSVQSGTDGYPPYGPGSVPWGAYDMQRAQGHR 315
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3178726 3187887 + Cp4.1LG06g05250.1 Cpe06g00530 471310

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00530 315 Coils Coil 153 173 - -
Cpe06g00530 315 MobiDBLite consensus disorder prediction 1 28 - -
Cpe06g00530 315 PANTHER PROTEIN FLX-LIKE 2 3 315 IPR040353 -
Cpe06g00530 315 Coils Coil 219 253 - -
Cpe06g00530 315 Coils Coil 83 117 - -
Cpe06g00530 315 PANTHER PROTEIN FLX-LIKE 1 3 315 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00530 - - - csv:101204235 555.058
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe02g00651 Cpe06g00530 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g02458 Cpe-Chr1:20350802 Cpe06g00530 Cpe-Chr6:3178726 1.49E-44 dispersed
Cpe02g01204 Cpe-Chr2:10934622 Cpe06g00530 Cpe-Chr6:3178726 8.98E-57 dispersed
Cpe06g00530 Cpe-Chr6:3178726 Cpe20g00888 Cpe-Chr20:7933474 5.52E-62 dispersed
Cpe02g00651 Cpe-Chr2:4004095 Cpe06g00530 Cpe-Chr6:3178726 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g23 Blo03g00711 . . . . . . . . . Cma01g01272 . Car01g01088 Car09g00600 Sed11g1611 Cpe06g00530 Cpe02g00651 Bhi09g03572 Tan01g4248 Cmetu07g1260 . Hepe01g1470 . . . . . . . . . . . Cone14ag1015 . Lsi04g01975 Csa04g02253 . Cme07g00491 . . . . . . . . . Cmo01g01327 Cmo09g00661 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007415 1 1 2 1 1 0 2 1 0 1 0 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 0 4 1 2 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00530 Cpe_Chr06 FPKM 10.406909 12.315513 8.151065 7.968547 7.722599 8.407856 7.940808 9.540091 9.799734 8.914573