Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe06g00531 | ATGGATTCCCTCCATGGCTTACCTCCCCTCAAAAGCCTCAGATTCCTTCAAGAACAACAGCAACTGAACCCGCAAAACGAGGATCAATCACTCCATTCCTCTTCCCTTCCAGCGAAGAAGCGAAAGGAGTCTCGCGATTCATCACTATTCTTTCTTCCAGACGCTAATTTGCCTCACTCAGCCACCATTTCCGCTTCTTACTGCTTGCCAACCAAGAAGAGAGTGTGGGCGCTTCACCCTGATTTTCCCCTCGAGTCATTGGATCTCAATGTTGAATACAAGCCTCCTTCAGAGGAAGAAGAATCGGTACCGAAAACAGAATCAGTGAGAGAGAAAAATGAAGAGGATGAAGAAAAGGAAATTTCTGACGTTGAAGACGAAGACGATGGGATCCTCTGTGCGATTTGTCAAAGCACAGACGGAGATCCTTCAGATCCAATCGTGTTCTGCGATGGATGCGATTTAATGGTACATTCTTCATGTTATGGCAATCCTCTGGCGAAGAGCGTACCAGAAGGCGATTGGTTCTGTATCCAATGCTTAGCTTCTTCGTCTTCTAACACAGAGAAGAAGGTATCAGAAACTCCATTTTCATGCTGCCTCTGTCCTCTCAAAGGAGGGGCCATGAAGCCGACGAACGATGGCCGATGGGCGCATATTGTTTGTGGGCTCTTTGTTCCTGAGGTGTTCTTCGAGGACCCAGATGGCAGAGAAGGAATTGATTGCTCATTGATTCTGAAGAGGAGATGGGAATCCAAATGTTACATCTGCAAAACTTCTAGCGGTTGTGCTATAGACTGCTCAGAGCCCAAATGCAATTTGGCTTTTCATGTTACTTGTGGGTTGAAGGAGGATCTCTGTATTGAGTACCAAGAAAGAAGAAGATCTGGTGCCATTGTAGCTGGGTTCTGCAGAAACCACACCGACTTGTGGAAGAAGCAACAACTAACAGGAAAGTTCAAGATCGTGGCTCGAGACGAAGGTAAAATGTAG | 993 | 46.32 | MDSLHGLPPLKSLRFLQEQQQLNPQNEDQSLHSSSLPAKKRKESRDSSLFFLPDANLPHSATISASYCLPTKKRVWALHPDFPLESLDLNVEYKPPSEEEESVPKTESVREKNEEDEEKEISDVEDEDDGILCAICQSTDGDPSDPIVFCDGCDLMVHSSCYGNPLAKSVPEGDWFCIQCLASSSSNTEKKVSETPFSCCLCPLKGGAMKPTNDGRWAHIVCGLFVPEVFFEDPDGREGIDCSLILKRRWESKCYICKTSSGCAIDCSEPKCNLAFHVTCGLKEDLCIEYQERRRSGAIVAGFCRNHTDLWKKQQLTGKFKIVARDEGKM | 330 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 3188388 | 3191305 | + | Cp4.1LG06g05320.1 | Cpe06g00531 | 471311 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe06g00531 | 330 | MobiDBLite | consensus disorder prediction | 18 | 33 | - | - | |
Cpe06g00531 | 330 | PANTHER | PHD FINGER PROTEINS | 3 | 105 | - | - | |
Cpe06g00531 | 330 | PANTHER | PHD FINGER PROTEINS | 115 | 326 | - | - | |
Cpe06g00531 | 330 | CDD | PHD_BRPF_JADE_like | 132 | 180 | - | - | |
Cpe06g00531 | 330 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 105 | 194 | IPR013083 | - | |
Cpe06g00531 | 330 | MobiDBLite | consensus disorder prediction | 93 | 117 | - | - | |
Cpe06g00531 | 330 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 195 | 310 | IPR013083 | - | |
Cpe06g00531 | 330 | PANTHER | RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN | 115 | 326 | - | - | |
Cpe06g00531 | 330 | PANTHER | RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN | 3 | 105 | - | - | |
Cpe06g00531 | 330 | SMART | PHD_3 | 132 | 181 | IPR001965 | - | |
Cpe06g00531 | 330 | SMART | PHD_3 | 253 | 308 | IPR001965 | - | |
Cpe06g00531 | 330 | MobiDBLite | consensus disorder prediction | 18 | 43 | - | - | |
Cpe06g00531 | 330 | MobiDBLite | consensus disorder prediction | 93 | 125 | - | - | |
Cpe06g00531 | 330 | SUPERFAMILY | FYVE/PHD zinc finger | 114 | 181 | IPR011011 | - | |
Cpe06g00531 | 330 | CDD | ePHD | 199 | 307 | - | - | |
Cpe06g00531 | 330 | Pfam | PHD-finger | 133 | 181 | IPR019787 | - | |
Cpe06g00531 | 330 | ProSiteProfiles | Extended PHD (ePHD) domain profile. | 196 | 308 | IPR034732 | - | |
Cpe06g00531 | 330 | ProSiteProfiles | Zinc finger PHD-type profile. | 130 | 183 | IPR019787 | - | |
Cpe06g00531 | 330 | Pfam | PHD-zinc-finger like domain | 198 | 296 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cpe02g00649 | Cpe06g00531 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe02g00649 | Cpe-Chr2:3995301 | Cpe06g00531 | Cpe-Chr6:3188388 | 0 | dispersed | |
Cpe06g00531 | Cpe-Chr6:3188388 | Cpe09g00030 | Cpe-Chr9:163417 | 1.36E-19 | dispersed | |
Cpe06g00531 | Cpe-Chr6:3188388 | Cpe17g01004 | Cpe-Chr17:7601005 | 1.88E-27 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
49665 | PF13832 | zf-HC5HC2H_2 | 4.50E-29 | CL0390 | Cpe | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe06g00531 | K11380 | - | csv:101203744 | 544.658 |