Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00531 ATGGATTCCCTCCATGGCTTACCTCCCCTCAAAAGCCTCAGATTCCTTCAAGAACAACAGCAACTGAACCCGCAAAACGAGGATCAATCACTCCATTCCTCTTCCCTTCCAGCGAAGAAGCGAAAGGAGTCTCGCGATTCATCACTATTCTTTCTTCCAGACGCTAATTTGCCTCACTCAGCCACCATTTCCGCTTCTTACTGCTTGCCAACCAAGAAGAGAGTGTGGGCGCTTCACCCTGATTTTCCCCTCGAGTCATTGGATCTCAATGTTGAATACAAGCCTCCTTCAGAGGAAGAAGAATCGGTACCGAAAACAGAATCAGTGAGAGAGAAAAATGAAGAGGATGAAGAAAAGGAAATTTCTGACGTTGAAGACGAAGACGATGGGATCCTCTGTGCGATTTGTCAAAGCACAGACGGAGATCCTTCAGATCCAATCGTGTTCTGCGATGGATGCGATTTAATGGTACATTCTTCATGTTATGGCAATCCTCTGGCGAAGAGCGTACCAGAAGGCGATTGGTTCTGTATCCAATGCTTAGCTTCTTCGTCTTCTAACACAGAGAAGAAGGTATCAGAAACTCCATTTTCATGCTGCCTCTGTCCTCTCAAAGGAGGGGCCATGAAGCCGACGAACGATGGCCGATGGGCGCATATTGTTTGTGGGCTCTTTGTTCCTGAGGTGTTCTTCGAGGACCCAGATGGCAGAGAAGGAATTGATTGCTCATTGATTCTGAAGAGGAGATGGGAATCCAAATGTTACATCTGCAAAACTTCTAGCGGTTGTGCTATAGACTGCTCAGAGCCCAAATGCAATTTGGCTTTTCATGTTACTTGTGGGTTGAAGGAGGATCTCTGTATTGAGTACCAAGAAAGAAGAAGATCTGGTGCCATTGTAGCTGGGTTCTGCAGAAACCACACCGACTTGTGGAAGAAGCAACAACTAACAGGAAAGTTCAAGATCGTGGCTCGAGACGAAGGTAAAATGTAG 993 46.32 MDSLHGLPPLKSLRFLQEQQQLNPQNEDQSLHSSSLPAKKRKESRDSSLFFLPDANLPHSATISASYCLPTKKRVWALHPDFPLESLDLNVEYKPPSEEEESVPKTESVREKNEEDEEKEISDVEDEDDGILCAICQSTDGDPSDPIVFCDGCDLMVHSSCYGNPLAKSVPEGDWFCIQCLASSSSNTEKKVSETPFSCCLCPLKGGAMKPTNDGRWAHIVCGLFVPEVFFEDPDGREGIDCSLILKRRWESKCYICKTSSGCAIDCSEPKCNLAFHVTCGLKEDLCIEYQERRRSGAIVAGFCRNHTDLWKKQQLTGKFKIVARDEGKM 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3188388 3191305 + Cp4.1LG06g05320.1 Cpe06g00531 471311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00531 330 MobiDBLite consensus disorder prediction 18 33 - -
Cpe06g00531 330 PANTHER PHD FINGER PROTEINS 3 105 - -
Cpe06g00531 330 PANTHER PHD FINGER PROTEINS 115 326 - -
Cpe06g00531 330 CDD PHD_BRPF_JADE_like 132 180 - -
Cpe06g00531 330 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 105 194 IPR013083 -
Cpe06g00531 330 MobiDBLite consensus disorder prediction 93 117 - -
Cpe06g00531 330 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 195 310 IPR013083 -
Cpe06g00531 330 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 115 326 - -
Cpe06g00531 330 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 3 105 - -
Cpe06g00531 330 SMART PHD_3 132 181 IPR001965 -
Cpe06g00531 330 SMART PHD_3 253 308 IPR001965 -
Cpe06g00531 330 MobiDBLite consensus disorder prediction 18 43 - -
Cpe06g00531 330 MobiDBLite consensus disorder prediction 93 125 - -
Cpe06g00531 330 SUPERFAMILY FYVE/PHD zinc finger 114 181 IPR011011 -
Cpe06g00531 330 CDD ePHD 199 307 - -
Cpe06g00531 330 Pfam PHD-finger 133 181 IPR019787 -
Cpe06g00531 330 ProSiteProfiles Extended PHD (ePHD) domain profile. 196 308 IPR034732 -
Cpe06g00531 330 ProSiteProfiles Zinc finger PHD-type profile. 130 183 IPR019787 -
Cpe06g00531 330 Pfam PHD-zinc-finger like domain 198 296 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe02g00649 Cpe06g00531 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00649 Cpe-Chr2:3995301 Cpe06g00531 Cpe-Chr6:3188388 0 dispersed
Cpe06g00531 Cpe-Chr6:3188388 Cpe09g00030 Cpe-Chr9:163417 1.36E-19 dispersed
Cpe06g00531 Cpe-Chr6:3188388 Cpe17g01004 Cpe-Chr17:7601005 1.88E-27 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49665 PF13832 zf-HC5HC2H_2 4.50E-29 CL0390 Cpe TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00531 K11380 - csv:101203744 544.658