Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00532 ATGGCGGAGAAGAACAACAACACATCAAGATTCGGAGGTTCGATTTTGGTACCTTCCGTTCAAGAGTTGGCGAAACAGCCGATCGTCGAAGTTCCATCTCGATACATCCGCCCCGATCTCCACTCCTTCCCGATCGTCTCCGCCGCTTCCGAAATCCCCGTTATCGATATGTCGAACTTTCACTCCAACGCTTCAATGTACTCCGAATTGGCTCGGCTTCATTCCGCTTGCAAAAATTGGGGATTCTTTCAGTTGGTGAACCATGGAGTGAGCGATTTGTTGATGGAGAAAATGAAGGCGGAGACGCAGATGTTCTTCAATCTACCGATTGAAGAAAAGAAAAAGCTATGGCAGAGTGAAGAAGATGCTGAAGGATTTGGACAAGCTTTCGTTGTAAGTGAAGAACAGAAACTGGATTGGTGCGACCTTTTCTTCATCGCTACCGCGCCTCCACATCTCAGGAAACCGCGCTTATTTCAAAACCTCCCTCTCGCTTTCCGAAACACAATGGAGGAGTACTCGGCAGAGGTGAAGAATCTGGCGATTGCGATTTTCGAGCAATTTGAGAAAGCGTTGGGGATCAAAGATGGGGAGTTGACGGAGATCTTCAAGGATGGTAGTCAGTCGATGAGAATGAACTATTATCCTCCCTGCCCGGAGCCGGAGAAGGTGATCGGACTGACGCCGCATTCCGACGCCGTCGGCCTCACAATTCTGCTGCAAATCAACGAAATGGAAGGTCTGAAGATTAAGAAGGACGGGAATTGGGTTGCCGTGACGCCTCTCCCCAATGCGTTCATCGTCAACATTGGTGACATCATGGAGATTATAGATAACAACAAATGGGGAATACAAAAGCATAGAACACTGCGCCACGGTGAACGCAAAGAGGGAAAGGCTGTCCATAGCGACCTTCAACAACCCAAGTTTGGAGAAAGAAATAAGGCCAATTCCATCCCTCCTTACGCCTCACTCCCCTCCATTGTTTACAACTTTGACATACCAACAGTTCGTGAGGCTGCTCTTTTCTCGCAAACTAGACGGGAAGTCTCACCTCGACACCCTGCGCATTCAACCGTGAGAGATCCCACGTCCACGAGCGGCCAAGAACGAAAAGCTTTCATCGTCTTCTATCCGTGCTATGGGCTCCTCCTCCTCTTCACAGCGACCAGATGGTATCCGAGAGAGTATTGGAACACCAAAACGCCAGGGACTTACCAGTGCATATGTTGCAACACGCCTCTATTTGAATCATCAACTAAATTTGACAGTGGAACTGGTTGGCCATCGTATTACCAGCCCATTGGTGATAATGTCAAAACCAAGCTAGACCTGTCCATTATTTTCATGCCTCGAGAGGAAGTTCTTTGTGCTGCTTGTGATGCTCATCTGGGCCACGTCTTTGATGATGGACCGCCGCCAACTGTGAAGCGTTACTGCATCAATAGTGCTGCACTGAAATTGAAGCCGAAATAA 1476 48.51 MAEKNNNTSRFGGSILVPSVQELAKQPIVEVPSRYIRPDLHSFPIVSAASEIPVIDMSNFHSNASMYSELARLHSACKNWGFFQLVNHGVSDLLMEKMKAETQMFFNLPIEEKKKLWQSEEDAEGFGQAFVVSEEQKLDWCDLFFIATAPPHLRKPRLFQNLPLAFRNTMEEYSAEVKNLAIAIFEQFEKALGIKDGELTEIFKDGSQSMRMNYYPPCPEPEKVIGLTPHSDAVGLTILLQINEMEGLKIKKDGNWVAVTPLPNAFIVNIGDIMEIIDNNKWGIQKHRTLRHGERKEGKAVHSDLQQPKFGERNKANSIPPYASLPSIVYNFDIPTVREAALFSQTRREVSPRHPAHSTVRDPTSTSGQERKAFIVFYPCYGLLLLFTATRWYPREYWNTKTPGTYQCICCNTPLFESSTKFDSGTGWPSYYQPIGDNVKTKLDLSIIFMPREEVLCAACDAHLGHVFDDGPPPTVKRYCINSAALKLKPK 491
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3193077 3200634 + Cp4.1LG06g05330.1 Cpe06g00532 471312

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00532 491 MobiDBLite consensus disorder prediction 290 309 - -
Cpe06g00532 491 SUPERFAMILY Clavaminate synthase-like 17 293 - -
Cpe06g00532 491 TIGRFAM TIGR00357: methionine-R-sulfoxide reductase 393 490 IPR002579 GO:0033743
Cpe06g00532 491 PANTHER PROTEIN SRG1-LIKE 11 301 - -
Cpe06g00532 491 Pfam SelR domain 395 490 IPR002579 GO:0033743
Cpe06g00532 491 SUPERFAMILY Mss4-like 393 490 IPR011057 -
Cpe06g00532 491 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 206 308 IPR005123 -
Cpe06g00532 491 Gene3D Peptide methionine sulfoxide reductase. 388 491 - -
Cpe06g00532 491 MobiDBLite consensus disorder prediction 290 318 - -
Cpe06g00532 491 Pfam 2OG-Fe(II) oxygenase superfamily 208 290 IPR044861 -
Cpe06g00532 491 ProSiteProfiles Methionine-R-sulfoxide reductase (MsrB) domain profile. 365 491 IPR002579 GO:0033743
Cpe06g00532 491 Pfam non-haem dioxygenase in morphine synthesis N-terminal 52 151 IPR026992 -
Cpe06g00532 491 PANTHER OXOGLUTARATE/IRON-DEPENDENT DIOXYGENASE 11 301 - -
Cpe06g00532 491 Gene3D - 15 315 IPR027443 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00532 - - - csv:101203495 441.039
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00357 Cpe-Chr4:4218064 Cpe06g00532 Cpe-Chr6:3193077 2.66E-17 dispersed
Cpe06g00532 Cpe-Chr6:3193077 Cpe19g01103 Cpe-Chr19:7448605 6.11E-85 dispersed
Cpe15g00397 Cpe-Chr15:5166582 Cpe06g00532 Cpe-Chr6:3193077 4.23E-21 dispersed
Cpe06g00532 Cpe-Chr6:3193077 Cpe10g00117 Cpe-Chr10:763994 7.47E-108 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g15 . . . . . . . . . . . . . Car09g00602 . Cpe06g00532 . Bhi09g03579 . . . Hepe01g1475 . . Cla11g01675 Cam11g1742 Cec11g1767 Cco11g1768 Clacu11g1900 Cmu11g1711 Cre11g2125 . Cone9ag0242 . . Lsi04g01969 Csa04g02248 . . . . . . . . . . . . Cmo09g00664 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000294 1 7 5 2 1 2 4 3 2 3 3 3 5 6 4 3 3 4 4 3 4 3 2 7 9 3 4 4 6 28 138
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00532 Cpe_Chr06 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0