Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00565 ATGTCAACTGTCGATGAAGATGATAGGGAGCCAGCCATGGAGTCTGGTGAATCTGATGAAGGAATAGTTGTCCGAGAATTCTGTGCAAATGGGGTATGCATAAAAACTACAGAAGTAGAAGCAAAGCTCGATGAGGGAAATATCCAAGAGGCAGAATCTTCATTACGGGAAGGGTTATCTCTCAATTTAGAGGAAGCCAGAGCCCTTCTTGGGAAGTTGGAATATCAGAGAGGCAATGTTGAAGGTGCTCTACGTGTGTTTGATGGTATTGATCTCCAAGCAGCTATTCAACGATTACAGCCTTCCATTGCTGAGAAGACTCCTCCGAAAAAAGGACGTTCACGCCCTGAATCTCAACAGGCAGTTTCCCAGCATGCTGCAAGCCTGGTGCTTGAAGCCATATATTTAAAAGTGAAGTCTCTACAGAAGCTAGGGAGAGTAAATGAGGCTGCTGATGAGTGTACGAGTGTCCTTGATGCCGTAGAAAAGATATTCCAACAAGGAATTCCTGATGCGCAAGTGGATGGTAGATTGCAAGAGACTATCAATCAGGCTGTAGAACTCCTCCCTGAGCTATGGAAGCAGGCTGGCTGTTTCCAGGAAGCAGTATCTGCCTATAGGCGTGCCCTCTTAAGCCAATGGAACCTCAATAATGAAAGCTGTGCTAGGATCCAGAAAGGATTTGCTGTGTTTTTGCTTTACAGTGGAGTAGAGGCTGGTCCTCCTAGTTTAGCTGTTCAACTTGAAGGTTCATATGTACCGAAAAATAATTTGGAAGAAGCAATTCTACTTTTAATGCTTCTTGTGAAGAAATGTTACCTTTGTAAGATAAAGTGGGATCCATCAGTGATGGAGCACCTAATATTTGCTCTATCCACATGCAGCCAGACTTCTGTTTTAGCAAAACAACTTGAAGAGGTCATGCCTGGAGTATATCACCGCGTAGATCGTTGGAAGTCTTTAGCTCTTTGTTATTGTGCAGCCGGACAGAATAAAGTTGCCTTAAATCTTCTGAGAAAGTGTCTACACAAACACGAAAAACCAGATGATGTGGCAGCCTTATTATTGGCTGCCAAGGTCTGTAGTGAGGATCCTTTTCTCTCTGCCGAAGGTGTGGGTTACGCCCAGCGAGCACTGAACAATTGTGTAGAAAACGAAGAGCATTTAAAGGGTGTGAGTCTTCGCTTGTTAGGCCTTTGTTTGGGAAAACAAGCCAAAATGTCTTCCTCTGACTTAGAGAGGTCTCGTCTTCAGTCAGACGCATTGAAATCTCTTGAGGCAGCAAGTGGTCTGGAGAGAAATAACTTAGATTTGATGCTTGAGTTAGGAGTACAATATTCAGAATATCGGAATTTGAATGCTGCTTTGCAATATGCAAAGAAGTTCATTGATGAAACAGGTGGCTCTGTCTTAAAAGGCTGGCAGTTGCTTGCTCTTGTTTTGTCTGCCCAAAAGAGATTTTCAGAGGCTGAAGTGGTCACCGATGCTGCAATGGATGAGACCACAAAATGGGAACAAGGACCACTGCTCAGACTCAAGGCAAAGCTGAAGGTCTCTCAATCATTACATATGGATGCTATTGAAACTTATCGTTATCTTCTTGCGTTAGTTCAAGCGCAAAAGAAATCGTTTGGGCATCTCAGAATTGTCCCTCAGGTTGAAGATGATAAAGTGAATGAATTTGAAGTTTGGAATGGTCTAGCCAATTTATACTCCAGCCTTTCACATTGGAAAGATGCAGAGATATGTCTAGGAAAAGCAAAGGAGCTGAAAGAGTTCTCCCCAGAAGAAATGATCTCTTTCATAAATTGCCTTTCACTGCCTGTCTTTGTCCTTCAAGGTCTAATGTGTGAAGGAAGTGAGAAAATACAAGAAGCTCTAGCTGCTTATATTAATGCTATCCTACTCGAACCGACTTACGTTCCTTGCAAGGTTTTGATTGGTGCTCTTTGGTCAAAAGCGGGCCCGGACGCATTGCCTATAGCGAGAAGCTTACTTTCGGATGCATTGAGATTAGATCCGACCAACCGTAAGGCTTGGTTTTACTTGGGGGTCATTCATAGGGACGAAGGACGAATGGCTGATGCTGTAGACTGCTTTCAGGCAGCCGCCATGCTTGAAGAATCAGACCCCATTGAAAGCTTCAGCAGTGTTCTCTAA 2160 43.66 MSTVDEDDREPAMESGESDEGIVVREFCANGVCIKTTEVEAKLDEGNIQEAESSLREGLSLNLEEARALLGKLEYQRGNVEGALRVFDGIDLQAAIQRLQPSIAEKTPPKKGRSRPESQQAVSQHAASLVLEAIYLKVKSLQKLGRVNEAADECTSVLDAVEKIFQQGIPDAQVDGRLQETINQAVELLPELWKQAGCFQEAVSAYRRALLSQWNLNNESCARIQKGFAVFLLYSGVEAGPPSLAVQLEGSYVPKNNLEEAILLLMLLVKKCYLCKIKWDPSVMEHLIFALSTCSQTSVLAKQLEEVMPGVYHRVDRWKSLALCYCAAGQNKVALNLLRKCLHKHEKPDDVAALLLAAKVCSEDPFLSAEGVGYAQRALNNCVENEEHLKGVSLRLLGLCLGKQAKMSSSDLERSRLQSDALKSLEAASGLERNNLDLMLELGVQYSEYRNLNAALQYAKKFIDETGGSVLKGWQLLALVLSAQKRFSEAEVVTDAAMDETTKWEQGPLLRLKAKLKVSQSLHMDAIETYRYLLALVQAQKKSFGHLRIVPQVEDDKVNEFEVWNGLANLYSSLSHWKDAEICLGKAKELKEFSPEEMISFINCLSLPVFVLQGLMCEGSEKIQEALAAYINAILLEPTYVPCKVLIGALWSKAGPDALPIARSLLSDALRLDPTNRKAWFYLGVIHRDEGRMADAVDCFQAAAMLEESDPIESFSSVL 719
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3416728 3422830 + Cp4.1LG06g05620.1 Cpe06g00565 471345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00565 719 Pfam Tetratricopeptide repeat 679 711 IPR019734 GO:0005515
Cpe06g00565 719 MobiDBLite consensus disorder prediction 1 20 - -
Cpe06g00565 719 Gene3D Tetratricopeptide repeat domain 298 596 IPR011990 GO:0005515
Cpe06g00565 719 PANTHER PROTEIN NPG1 13 718 IPR043376 -
Cpe06g00565 719 SMART tpr_5 677 710 IPR019734 GO:0005515
Cpe06g00565 719 SMART tpr_5 315 348 IPR019734 GO:0005515
Cpe06g00565 719 SMART tpr_5 471 504 IPR019734 GO:0005515
Cpe06g00565 719 SMART tpr_5 561 594 IPR019734 GO:0005515
Cpe06g00565 719 SMART tpr_5 607 640 IPR019734 GO:0005515
Cpe06g00565 719 ProSiteProfiles TPR repeat profile. 677 710 IPR019734 GO:0005515
Cpe06g00565 719 PANTHER CALMODULIN-BINDING PROTEIN 13 718 - -
Cpe06g00565 719 Gene3D Tetratricopeptide repeat domain 38 236 IPR011990 GO:0005515
Cpe06g00565 719 SUPERFAMILY TPR-like 556 698 IPR011990 GO:0005515
Cpe06g00565 719 SUPERFAMILY TPR-like 419 591 IPR011990 GO:0005515
Cpe06g00565 719 Gene3D Tetratricopeptide repeat domain 610 714 IPR011990 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01531 Cpe-Chr3:11950278 Cpe06g00565 Cpe-Chr6:3416728 5.69E-12 dispersed
Cpe05g00076 Cpe-Chr5:372927 Cpe06g00565 Cpe-Chr6:3416728 0 dispersed
Cpe06g00565 Cpe-Chr6:3416728 Cpe15g00093 Cpe-Chr15:703413 0 dispersed
Cpe02g00607 Cpe-Chr2:3665482 Cpe06g00565 Cpe-Chr6:3416728 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00565 K21843 - csv:101206641 1272.3