Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00590 ATGGCGGCATTGCTGCCCTCCGGCTCATGGCTTTCTCTGCCACTGCAATGTGGCTGCCCGAATCCTTCATCCTCTTCCTCTACTTCCACTTCCAAGTACACCACCAATTTCCGCTGTTGCTCGATAACTCAGATGCATTCGCCGGAGGCATCCGAACAAGGTAAGATTCCGATAATTCCTCACACGCCACCGCTTCGCCTCGCCGCATCTGCGGTGGTTTTTCTCGGTTTAAATATTGGTTTCGGCATCGGAGCTCGATCCTGCTCTGCGGCTCTTTCGCCGGTGCCTCCTCCGGTGGCGGATAATTACAACTTGGAAGAGGAGAAGGTAGTTCTGAGTGAGGATGAGAAGCTGGAGAAGAAGAAAATGGACGAAGCATTTGAAGAATGGAAGTCGAAGAAGTTTGCTTTGACCGTTCCTTTGAGCGTCATTGCGCTTCGTGATTCTATTCCTCCTTCTTGGATTAAGGAGTTTATTCAATCACAAGGGAAGAGATTAAAATTCAATGTGAAGTTCAATGGAACTCTTGGGAGTATTTTTTCTGATTTATCTGTTCCAATTGACAAAGGCAATGTTAAGTCTTCATCCGTCATGGTTGCTGATCTTGTTAGTATTGGCGATTCCTGGCTCAACTTTGCCATTAAGAAGGCGCTTATCGAGCCCATTCACGATGTGGAAGACCAAGAGTGGTTTAATAACTTAAGCACTAGATGGAAGGTACTTTTACGCAGAAACTCCGAGGGTGAAATAGATCCGGGAGGTAAAATATGGTCGGCTCCATATAGATGGGGCTGCATGGTTATAGCATACAATAAAGTCAAATTTCGAAAGAACAACTTGGCTCCCATGGAGGACTGGTCGGATTTATGGCGCCCTGAACTTCGAGGAAGGATTTCGATGGTCGATTCACCTAGAGAAGTAATTGGTGCTGTTTTAAAGTACATGGGTGCATCCTACAACACAAAAGACATTAGCTCGCAAATTCCTGGTGGCAAAGACGCCGTTCAGCAAAATTTAACTTCACTTGCAAAACAGGTACGTTTGTTTGATAGCACACACTATCTGAAAGCATTTGCGGTTGGGGACGTTTGGGTTGCTGTTGGATGGAGTAGCGATGTTCTTCCTGTCGTCAAACGCATGTCGAATATTGCAGTGGTCGTCCCCAAGTCTGGATCAAGCTTATGGGCTGATTTATGGGCAATTCCTGCAACCTCCAGAATTGAGGCAGAGCCAGTTGGTGGAAGAGTTAAGGGACCCTCCCCTTTAATCCACCAATGGATTGAATTTTGCTTGCAGCCTGCTAGAGCACTGCCTTTCAAGCAGGAGGTAGTTCCCGGTGCGTCACCCGCCTCCATCGAAGGTCCAGAGGTTGTTCCTAAAGAACTGTTTGAAGGTAAACCGAAGTTGGATACGAACCTTATCGGTGGAGTACCCCCGCTCGACATTTTAGACAAATGTGAGTTCCTTGAGCCTTTATCTGAGTCTACTTTAGCAGATTTTCGATGGTTCGCTGCGAATATGCAGAAAAAACCGAACCATCGCTTGATGGACAGAGTTCATCAAGCTGTCTCATCCCTTGTAGGATTTGTTTCTCAAATCAGCTTTAAAAACTGA 1614 46.34 MAALLPSGSWLSLPLQCGCPNPSSSSSTSTSKYTTNFRCCSITQMHSPEASEQGKIPIIPHTPPLRLAASAVVFLGLNIGFGIGARSCSAALSPVPPPVADNYNLEEEKVVLSEDEKLEKKKMDEAFEEWKSKKFALTVPLSVIALRDSIPPSWIKEFIQSQGKRLKFNVKFNGTLGSIFSDLSVPIDKGNVKSSSVMVADLVSIGDSWLNFAIKKALIEPIHDVEDQEWFNNLSTRWKVLLRRNSEGEIDPGGKIWSAPYRWGCMVIAYNKVKFRKNNLAPMEDWSDLWRPELRGRISMVDSPREVIGAVLKYMGASYNTKDISSQIPGGKDAVQQNLTSLAKQVRLFDSTHYLKAFAVGDVWVAVGWSSDVLPVVKRMSNIAVVVPKSGSSLWADLWAIPATSRIEAEPVGGRVKGPSPLIHQWIEFCLQPARALPFKQEVVPGASPASIEGPEVVPKELFEGKPKLDTNLIGGVPPLDILDKCEFLEPLSESTLADFRWFAANMQKKPNHRLMDRVHQAVSSLVGFVSQISFKN 537
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3614432 3619483 - Cp4.1LG06g05920.1 Cpe06g00590 471370

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00590 537 Pfam Bacterial extracellular solute-binding protein 199 436 - -
Cpe06g00590 537 CDD PBP2_PotD_PotF_like_1 140 502 - -
Cpe06g00590 537 PANTHER SPERMIDINE/PUTRESCINE-BINDING PERIPLASMIC PROTEIN 67 521 - -
Cpe06g00590 537 PRINTS Bacterial periplasmic spermidine/putrescine-binding protein signature 181 202 IPR001188 GO:0015846|GO:0019808|GO:0042597
Cpe06g00590 537 PRINTS Bacterial periplasmic spermidine/putrescine-binding protein signature 255 271 IPR001188 GO:0015846|GO:0019808|GO:0042597
Cpe06g00590 537 PRINTS Bacterial periplasmic spermidine/putrescine-binding protein signature 284 298 IPR001188 GO:0015846|GO:0019808|GO:0042597
Cpe06g00590 537 PRINTS Bacterial periplasmic spermidine/putrescine-binding protein signature 302 321 IPR001188 GO:0015846|GO:0019808|GO:0042597
Cpe06g00590 537 PRINTS Bacterial periplasmic spermidine/putrescine-binding protein signature 388 407 IPR001188 GO:0015846|GO:0019808|GO:0042597
Cpe06g00590 537 SUPERFAMILY Periplasmic binding protein-like II 141 464 - -
Cpe06g00590 537 PANTHER SPERMIDINE/PUTRESCINE-BINDING PERIPLASMIC PROTEIN 67 521 - -
Cpe06g00590 537 Gene3D - 194 443 - -
Cpe06g00590 537 Gene3D - 264 395 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00590 - - - csv:101211357 888.256
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g922 . . . . . . Bma07g01222 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda09g00464 Bpe08g01064 . . . . . . . . . . . Cpe06g00590 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009483 1 2 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00590 Cpe_Chr06 FPKM 18.2397 17.04497 12.117903 11.052253 6.417582 8.262075 12.66952 13.135978 13.807413 15.577379