Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00591 ATGCTTGCAGCTTTCTTCTCTCTTCCTCAGCTTCCCGTTCGCGCTATAACCAGAAATATTGTACGTAACATGAGTGGAGTACAAGCACCAAAACATCCGAAGTTTATCTCTGTGGAAGGGGCTGACATTTACTCAAGAAGTAAATCTGACGGTATCAGATTTCGTTTCGTTTCTTACAATATTTTAGCGCAGGTCTATGTGAAGAGTTCTTTTTTTCCACATTCTCCATCCTCTTGCCTTAGGTGGAAAGCTCGATCGCAGGCAATTTTAGCAGTTCTTAAGAATCTTGAGGCCGATTTTCTCTGTCTACAGGAAATTGATGAATATGATAGCTTTTACAAAGGAACTTTGGAAAGATGTGGATATTCCAGCTTATATATTCAGAGAAGTGGGCAGAAGCGTGATGGATGCGGGATCTTTTTCAAGCATGAAAATGCTGAGTTGATCATAGAAGATAGAATTGAATACAATGATCTTGTAAACTCCATACAAGATGATGATTGTTCTTGTGAAGAGAAGTCTGAAAACGTGGTAACCAGTGCAAGTCACGATGTTGAATCAAACAAGGGTTCATCACCAAAAACTACACTAGCCGATCGTGGGGATCCTAACGATCCCCGTGTGAGACTGAAACGTGATTGTGTCGGAATTATGGCTGCTTTCAGACTCAAGAAGCCTTTTCATCATGTTGTAATCGTTGCAAACACCCATCTTTACTGGGATCCAGAATGGGCTGATGTCAAGCTCGCCCAGGCCAAATATCTTCTATCACGCCTTGCTCGATTCAAAACGTTAGTATCTGAGAAGTTCGAATGCACGCCCTCGATACTTTTGGCTGGCGACTTCAATTCAACCCCAGGGGATAAGGTATACCAATACCTTGTTTCTGGCAAATCTTCTTCTGGATTTTCGCCTGAATGCTTGGAAGAGCTTCCATTGCCCCTTAGTAGTGTGTATGCTACTACACTAGGGAGAGAACCGTCATTTACAAACTTCACTCCTGGCTTCACTGGTACTCTTGATTATATATTCTTCTCACCTTCAGACTCTATAAGACCCATTAGCTTTCTAGAACTTCCTGAATCAGAATGCCCAGAGGTCATTGGAGGGTTACCCAATTTTAGCTACCCAAGTGATCATCTTCCAATTGGAGCTGACTTTGAAATCACAATGGAATAA 1179 41.98 MLAAFFSLPQLPVRAITRNIVRNMSGVQAPKHPKFISVEGADIYSRSKSDGIRFRFVSYNILAQVYVKSSFFPHSPSSCLRWKARSQAILAVLKNLEADFLCLQEIDEYDSFYKGTLERCGYSSLYIQRSGQKRDGCGIFFKHENAELIIEDRIEYNDLVNSIQDDDCSCEEKSENVVTSASHDVESNKGSSPKTTLADRGDPNDPRVRLKRDCVGIMAAFRLKKPFHHVVIVANTHLYWDPEWADVKLAQAKYLLSRLARFKTLVSEKFECTPSILLAGDFNSTPGDKVYQYLVSGKSSSGFSPECLEELPLPLSSVYATTLGREPSFTNFTPGFTGTLDYIFFSPSDSIRPISFLELPESECPEVIGGLPNFSYPSDHLPIGADFEITME 392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3620491 3626822 - Cp4.1LG06g05940.1 Cpe06g00591 471371

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00591 392 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 13 390 - -
Cpe06g00591 392 SUPERFAMILY DNase I-like 53 389 IPR036691 -
Cpe06g00591 392 Pfam Endonuclease/Exonuclease/phosphatase family 57 380 IPR005135 GO:0003824
Cpe06g00591 392 MobiDBLite consensus disorder prediction 177 205 - -
Cpe06g00591 392 PANTHER BNAC08G09040D PROTEIN 13 390 - -
Cpe06g00591 392 Gene3D Endonuclease/exonuclease/phosphatase 25 392 IPR036691 -
Cpe06g00591 392 MobiDBLite consensus disorder prediction 180 198 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00591 K12603 CNOT6, CCR4; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4] - csv:101221637 690.649
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00351 Cpe-Chr3:1847342 Cpe06g00591 Cpe-Chr6:3620491 1.91E-30 dispersed
Cpe06g00591 Cpe-Chr6:3620491 Cpe08g00926 Cpe-Chr8:7272760 9.00E-30 dispersed
Cpe02g00588 Cpe-Chr2:3520978 Cpe06g00591 Cpe-Chr6:3620491 6.92E-10 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g936 . . . . . . . . Cmo06g00577 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma06g00571 . Car06g00508 . . Cpe06g00591 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009643 1 2 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 0 2 2 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00591 Cpe_Chr06 FPKM 29.515152 25.993969 19.598099 20.852411 53.628426 46.659889 55.303684 26.722498 26.273762 27.604948