Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00592 ATGGACTTGCCAAGATTCGCCCGTCCAAGGGGAGATAATGGATCTTCATCTTCTAGCCCTAATCTCTACGTCGCCAACTGTGGACCGGCCGTCGGAATCAGCCACCGCGCAGTTGCGGCGGTTTTTGGCGATTTTGGGGACGTGAAAGGGGTTCACGCAGCTGACGAGACCGGCACTCGCGTCATTGTATGCTTTTCCGAAGAATCCAGCGCCCGAGCCGCTCTTGAGGCGCTACACGGCCGCCCTTGCTCTCTTCTCGGAGGCCGGACTTTGCACATACGCTATTCCATCATCAGGCCGTCCATTTCGCAGCTTAATGATTCTGTTTCAGTTTCTTTGTCGGCTTCGGAGTTGGACATTCCTGGACTTTACCTATTGCACGACTTCGTCACTGCTAAAGAAGAGGAGGAATTGCTTTCGGAAGTTGATGCTCGGCCTTGGAATAATCTGGCGAAACGTAGAGTTCAGCATTATGGATATGAATTTTGCTATCAAACGAGAAATGTTAATACTAGACATCAGTTGGGCGAACTTCCATCATTTGTTTCTCATGTAGTTGATCGGATCTCCATGTTTCCAAACGCTGAGGATGTTGCAGATGCTGTTCTTGATCAATTGACTGTTAATGAATACCCACCTGGGGTGGGTTTGTCTCCTCATATAGACACCCATTCTGCATTTGAAGGATTGATTTTCAGCCTTTCCTTAGCAGGGCCATGCATTATGGAGTTTAGGAGGTATACCGAAGGCGCTTGGCACAAATGCCCTTCAAATATAGATTTGAAAATGGAGAATTCAGTAAACGACTCAAATTATCTGAGGAAAGCCATTTATCTTCCTCCTCGGTCGATGCTCCTACTGTCTGGAGAGGCACGTTACGCTTGGCATCATTACATTCCTCACCACAAGATTGACATGGTGAAGGACAGTGCAATCAGAAGGGGTCCTAGGAGGGTTTCTTTTACGTTTCGCAAGGTGAGTAGATTTAATGCTTATGTTCTTTCCGTTCGTCTCGTACATGATGAGCCTTACTTACCTGCATCTATTATTCATGATGTCAAGATGGCAGTTATCCTGCCTCATGGCAATTCTAAAGCTTTATAA 1104 46.74 MDLPRFARPRGDNGSSSSSPNLYVANCGPAVGISHRAVAAVFGDFGDVKGVHAADETGTRVIVCFSEESSARAALEALHGRPCSLLGGRTLHIRYSIIRPSISQLNDSVSVSLSASELDIPGLYLLHDFVTAKEEEELLSEVDARPWNNLAKRRVQHYGYEFCYQTRNVNTRHQLGELPSFVSHVVDRISMFPNAEDVADAVLDQLTVNEYPPGVGLSPHIDTHSAFEGLIFSLSLAGPCIMEFRRYTEGAWHKCPSNIDLKMENSVNDSNYLRKAIYLPPRSMLLLSGEARYAWHHYIPHHKIDMVKDSAIRRGPRRVSFTFRKVSRFNAYVLSVRLVHDEPYLPASIIHDVKMAVILPHGNSKAL 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3629339 3631498 - Cp4.1LG06g05980.1 Cpe06g00592 471372

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00592 367 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 20 98 IPR000504 GO:0003723
Cpe06g00592 367 Gene3D - 10 112 IPR012677 -
Cpe06g00592 367 PANTHER UNCHARACTERIZED 17 330 - -
Cpe06g00592 367 Gene3D - 114 331 IPR037151 -
Cpe06g00592 367 PANTHER ALKYLATED DNA REPAIR PROTEIN ALKBH8 HOMOLOG 17 330 - -
Cpe06g00592 367 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 202 327 IPR005123 -
Cpe06g00592 367 SUPERFAMILY RNA-binding domain, RBD 13 102 IPR035979 GO:0003676
Cpe06g00592 367 Pfam 2OG-Fe(II) oxygenase superfamily 122 324 IPR027450 -
Cpe06g00592 367 SUPERFAMILY Clavaminate synthase-like 120 326 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00592 K10770 ALKBH8, TRM9; alkylated DNA repair protein alkB homolog 8 [EC:1.14.11.- 2.1.1.229] - csv:101210859 590.112
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe02g00587 Cpe06g00592 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00592 Cpe-Chr6:3629339 Cpe10g00318 Cpe-Chr10:1847124 4.36E-12 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g942 . . . . . Bpe07g00049 . . . . . . . . . . Cpe02g00587 . . . . . . . . . . . . . . . . Cone6ag0886 Cone9ag0890 . . . . Blo03g00905 . . . . . . Bma12g00627 . . . . . . . . Cpe06g00592 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013705 1 1 1 1 1 0 1 1 0 1 0 1 0 1 1 0 1 1 1 1 1 1 1 1 1 0 1 1 1 0 23
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00592 Cpe_Chr06 FPKM 4.938286 5.174692 5.615888 5.405462 8.947053 8.13818 8.353611 5.288446 5.597007 4.587746