Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00595 ATGGTGGAAGCCATGGCTGAAAACCCTAAAATTGGTGTAAAAAAGCCTTTCAAACTCCCCCCCAGTTCCTCGCCTCCGTTGGTCAAATCCCCTCGCCTCCCCGTGCATCTCGACGCGCCTGACATATCGCCGGCTGCCAAAACCGTTTGCAAAGTCCTGGTCAGAGCCTCGCCAAATGATGTAGAAGCCGCGCTCTCCGCGACGGGAGTAGTTCCGTCGCCAGAGCTTGTCCAAGAAGTTCTAAGGGTTTCTTACAACTATCCGTCGTCGGCGATCAAATTCTTCCGGTGGGCGAGGCAGTTGGCGAAGCAGTCGGCGTACTCGTGGAATCTGATGGTTGATTTGCTGGGCAAGAATGAATTGTTCGATCAAATGTGGAACGCCATCCGCACCATGAGAGAAGAAAAAGTCCTTTCATTACCAACTTTCGTGTCTGTTTTCGGGAGTTATTGTTCGGCTGGCAGGTTCAAAGATGCGATTAAGAGCTTTGAAGTGATGGATAGGTACGACGTCGAGAAGGATGTGGTGGCGGTGAATTCTCTACTGAGTGCAATTTGCACCGAGGAAAATCAAACATCAAAGGCTTGGGAGTTCTTTAAAAAGCACAAAGAGAAGATTCCTCTAGATGGGGACTCATACGCCATTTTATTGGAAGGATGGGAGAAAGAAGGCAATGTGGAGAAAGCCGAGGTTACATTTGATGAAATGGTGAAAAGAGTTGGTTGGAATCCTGAAAATGTTTCAGCTTATGATGCATTTTTGATAACATTGGTTCGTCGGGGCCAATCTGCAGAGGCAGTTAAAGTTCTACTAGAAATAAAGAACAATGGTTGCTCTCCAGGTTTGAAATTCCTATCCAATGCTCTTGATAGTCTCATTAACCAAAATGATGCAACCCATGCGATTCTATTGTGGGATATAGCTGTAGGAAATGGATTAGTTCCAAACTTGATTATGTACAATGCCATAATCGGATTGCTTAGTGAGAAGGGTAAAATTGAAGACTCATTTCGGCTCTTGGACGCCATGGTTTTCCATGGAGCTTTTCCCAACTCCCTCACTTACAACCTGATCTTCAGCTGTTTGATTAAGAACAAGAAAGTTAAGGAAGCAAGCCAATTTTTCAGGGAAATGGTAAAGAATGAGTGCCCTCCCACCCCTTCTAATTGTGCTGCAGCTATCACAATGTTGTTTGATGGTTATGACCCTGAAACAGCCATTGATATATGGAACTTCATGGTTGATAATAACATCAAGCCTATGGATGCAAGTGCAAATGCACTGCTTATTGGTCTCTGCGACTTGGATCGATTAACAGAGATCAAAAGCAACTCAGTCGTCTTTCTCTGTGCACCAGCTAGAAAATTCCAGTATGCGTTAAAAATAAGGAAAGGAAGATACCAAAGCCTTCGCCGCCCATCGCTGCAACTTCTTGACAAGCTTGCATTCCTTCCTCGGTGTCTTTTCTCTGCCATGCCTAAAATTGAGCTCAGCAACACAACAAAAGTGGTGAGATCATCTGCCAATTCAAATGTACCTTCACTTTTACTTTCTTTTCGGTCTAGATTGCAATTAGTTTATGAGAAATTGCATTGGTCTCAGATGCCACCAAATTTCCTATCCAGCCTAAAGCGACATACTCGTCCCCTAATTTGGATGGCCGGCATAATCTGCGCCACCATAGCTGTTGCTGTGATTATCGCAGGCATCGTTAACTTCATCGGCTACGTGACGATCCGCCCTACGGTGCCTTCAATCAGCGTAACCTACGGACATCTCGATAGAATCCGAAACAGCAGAATCGGATTGCTTGAAGTCCAGATGAAGATCGTCGTCCGAGCCGAGAATCAAAATGCTAGAGCACAGGCAAGCTTCTCACATACCGATTTCGTCCTGATCTTCGACGGCATAGAAATTGCATCACTGATGGCTCACCGGCCGTTCAAAGTGAATAAGATGAGCTACCTGGATTTGCATTTCTTAGTGGAATCATCGGCTATTCCGCTCAATCCTATGCAGATGCAGCATCTAAGCTGGTCGCTGAATAGGAATTTGATGCAATTCGATCTTAAAGGAAGCTCGAGAACTCGATGGCGAGTTGGAGTTCTGGGACCGCTCAAGTTTTGGTGCCATTTGAACTGTCGCCTCAGGTTTTACCCGCGCAATGGAAGCTACATTCCCGCGCCTTGTTCTTCAAAGGATAAGTAA 2208 45.52 MVEAMAENPKIGVKKPFKLPPSSSPPLVKSPRLPVHLDAPDISPAAKTVCKVLVRASPNDVEAALSATGVVPSPELVQEVLRVSYNYPSSAIKFFRWARQLAKQSAYSWNLMVDLLGKNELFDQMWNAIRTMREEKVLSLPTFVSVFGSYCSAGRFKDAIKSFEVMDRYDVEKDVVAVNSLLSAICTEENQTSKAWEFFKKHKEKIPLDGDSYAILLEGWEKEGNVEKAEVTFDEMVKRVGWNPENVSAYDAFLITLVRRGQSAEAVKVLLEIKNNGCSPGLKFLSNALDSLINQNDATHAILLWDIAVGNGLVPNLIMYNAIIGLLSEKGKIEDSFRLLDAMVFHGAFPNSLTYNLIFSCLIKNKKVKEASQFFREMVKNECPPTPSNCAAAITMLFDGYDPETAIDIWNFMVDNNIKPMDASANALLIGLCDLDRLTEIKSNSVVFLCAPARKFQYALKIRKGRYQSLRRPSLQLLDKLAFLPRCLFSAMPKIELSNTTKVVRSSANSNVPSLLLSFRSRLQLVYEKLHWSQMPPNFLSSLKRHTRPLIWMAGIICATIAVAVIIAGIVNFIGYVTIRPTVPSISVTYGHLDRIRNSRIGLLEVQMKIVVRAENQNARAQASFSHTDFVLIFDGIEIASLMAHRPFKVNKMSYLDLHFLVESSAIPLNPMQMQHLSWSLNRNLMQFDLKGSSRTRWRVGVLGPLKFWCHLNCRLRFYPRNGSYIPAPCSSKDK 735
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3657315 3660713 - Cp4.1LG06g05950.1 Cpe06g00595 471375

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00595 735 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 26 442 - -
Cpe06g00595 735 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 316 350 IPR002885 -
Cpe06g00595 735 Gene3D Tetratricopeptide repeat domain 75 188 IPR011990 GO:0005515
Cpe06g00595 735 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 246 280 IPR002885 -
Cpe06g00595 735 Pfam PPR repeat family 315 363 IPR002885 -
Cpe06g00595 735 Gene3D Tetratricopeptide repeat domain 189 284 IPR011990 GO:0005515
Cpe06g00595 735 Gene3D Tetratricopeptide repeat domain 285 447 IPR011990 GO:0005515
Cpe06g00595 735 SUPERFAMILY TPR-like 87 269 IPR011990 GO:0005515
Cpe06g00595 735 PANTHER OSJNBA0019D11.15 PROTEIN 26 442 - -
Cpe06g00595 735 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 139 173 IPR002885 -
Cpe06g00595 735 TIGRFAM PPR: pentatricopeptide repeat domain 354 386 IPR002885 -
Cpe06g00595 735 TIGRFAM PPR: pentatricopeptide repeat domain 212 244 IPR002885 -
Cpe06g00595 735 TIGRFAM PPR: pentatricopeptide repeat domain 318 351 IPR002885 -
Cpe06g00595 735 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 209 239 IPR002885 -
Cpe06g00595 735 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 351 385 IPR002885 -
Cpe06g00595 735 Pfam PPR repeat 107 136 IPR002885 -
Cpe06g00595 735 Pfam PPR repeat 212 239 IPR002885 -
Cpe06g00595 735 Pfam PPR repeat 142 169 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00595 - - - bhj:120087227 770.385
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00538 Cpe-Chr1:3098947 Cpe06g00595 Cpe-Chr6:3657315 3.48E-61 dispersed
Cpe02g00842 Cpe-Chr2:5408632 Cpe06g00595 Cpe-Chr6:3657315 1.63E-09 dispersed
Cpe06g00595 Cpe-Chr6:3657315 Cpe14g00430 Cpe-Chr14:2702850 2.88E-57 dispersed
Cpe09g00549 Cpe-Chr9:3683360 Cpe06g00595 Cpe-Chr6:3657315 5.66E-13 dispersed
Cpe01g01993 Cpe-Chr1:17024029 Cpe06g00595 Cpe-Chr6:3657315 3.97E-114 transposed
Cpe13g00639 Cpe-Chr13:6101680 Cpe06g00595 Cpe-Chr6:3657315 1.61E-07 wgd
Cpe02g00583 Cpe-Chr2:3493247 Cpe06g00595 Cpe-Chr6:3657315 1.93E-130 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g948 . . . . . . Bma07g01219 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda09g00467 . . . . . . . . . . . . Cpe06g00595 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011572 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 2 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00595 Cpe_Chr06 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.199436 0.0