Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00596 ATGCAACCGTCTCCATCCTTGATTACTGGCCCTATCAGAACTCTAGCGACCACCGCCCGACCTTCCACGATCATCATCCAAGCCTACCAGCACCAGCAACCCAATCCAAAGTTCAATGGTATTTTTGGTTATAGAGCCGATCTTGTTGGTGGTTGTGGCCGTAGATTTCCTGCTTGTGCAAGTCCCAGCTCAGGGCCTCAAGTTCCGGCTGCTTCTGCTCCTTTTGTCCAATCCGATGTAGGCGCTGCGTCTCGGACGTCGGCACTGGAAAAGTTGGATACTGTCGAGGAGGGCCTAGAAAAGGCCATTTATCGATGCCGATTCATGGCGTTTTTGGGCGTCTTAGGGTCTTTAATTGGGTCTGTACTCTGTTTCGTCAAGGGGTGCGTTCATGTAGCAGCATCTTTATCAGAATATTTTGTAAATCGTGGAAAAGTGATTATGTTGCTAGTGGAGGCCATAGATGTTTATCTCTTAGGAACTGTTATGCTAGTCTTTGGCACGGGTCTCTATGAGCTGTTTATCAGCAATCTTGGAAGTGCACGGTCATTTTCAGAGAGAAGCGTTTTGCATAGATCCAACTTATTTGGCTTGTTCACTTTAAAGGAACGACCGAAATGGATGAACATAACAACAGTAAACGAGCTGAAAACAAAGCTGGGGCATGTCATAGTGATGCTGCTTCTAATTGGGTTTTTTGACAAGAGTAAAAAGGTGGTCATTCAATCTCCAGGTGATTTGCTTTGCTTAGCTGTTTCAATATTCCTTTCCTCTGCTACCTTGTTTTTGCTCTCAAAACTAACCGAATGA 810 45.31 MQPSPSLITGPIRTLATTARPSTIIIQAYQHQQPNPKFNGIFGYRADLVGGCGRRFPACASPSSGPQVPAASAPFVQSDVGAASRTSALEKLDTVEEGLEKAIYRCRFMAFLGVLGSLIGSVLCFVKGCVHVAASLSEYFVNRGKVIMLLVEAIDVYLLGTVMLVFGTGLYELFISNLGSARSFSERSVLHRSNLFGLFTLKERPKWMNITTVNELKTKLGHVIVMLLLIGFFDKSKKVVIQSPGDLLCLAVSIFLSSATLFLLSKLTE 269
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3661348 3665236 + Cp4.1LG06g05900.1 Cpe06g00596 471376

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00596 269 Pfam Uncharacterized protein family, UPF0114 103 235 IPR005134 -
Cpe06g00596 269 PANTHER OS06G0710300 PROTEIN 79 268 - -
Cpe06g00596 269 PANTHER OS06G0710300 PROTEIN 79 268 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00596 - - - csv:101204811 413.69
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe02g00582 Cpe06g00596 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g01569 Cpe-Chr2:13273391 Cpe06g00596 Cpe-Chr6:3661348 1.16E-54 dispersed
Cpe03g00851 Cpe-Chr3:5347659 Cpe06g00596 Cpe-Chr6:3661348 3.42E-55 dispersed
Cpe07g00448 Cpe-Chr7:2872022 Cpe06g00596 Cpe-Chr6:3661348 2.20E-34 transposed
Cpe02g00582 Cpe-Chr2:3485937 Cpe06g00596 Cpe-Chr6:3661348 5.46E-158 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g949 . . . . . . . . . . . . . . . . Cpe02g00582 . . . . . . . . . . . . . . . . . . . . . . Blo03g00908 . . . . . . . . . . . . . . . Cpe06g00596 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005376 1 6 1 0 1 0 2 1 0 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00596 Cpe_Chr06 FPKM 0.784941 0.670698 0.413103 0.724373 6.157217 5.852104 7.642148 0.538569 0.735231 0.51189