Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00599 ATGGAACAGTTGAAGACGATCGGCAGAGAGCTAGCCATGGGTTCTCAGGGAGGGTTTGGACAGTCGAAGGAGTTTCTGGATCTGATTAAATCGATCGGCGAAGCTAGATCCAAGGCTGAAGAGGAGCGAATTATCATCCAGGAGATGGAAAATTTGAAACGCCGTCTCACCGATCCCGACATTCCCAAGCGCAAGATGAAGGAGTATATTATTCGTCTCGTTTATGTCGAGATGCTCGGTCACGATGCCTCATTCGGCTACATTCATGCCGTCAAGATGACTCATGACGATAATCTTCTGCTGAAGCGCACTGGCTATTTGGCTGTCACCCTCTTTCTCAACGAGGACCACGACCTCATAATCCTCATTGTCAATACCATCCAGAAAGACCTCAAGTCTGACAATTATCTCATCGTCTGTGCGGCTCTCAATGCGGTGTGTAGGCTTATTAACGAGGAGACTATACCTGCAGTGTTACCGCAGGTTGTCGAGTTGTTGGGACACTCAAAGGAGGCCGTTAGAAAGAAGGCCATCATGGCTCTTCATCGCTTCCATCAGAAATCACCCTCTTCCATATCGCATCTTCTCTCCAATTTCCGTAAGAGGTTGTGTGACAACGATCCTGGAGTCATGGGAGCTACACTTTGCCCTCTTTTTGATCTCATTACCACGGATGTACATTCCTATAAAGATTTAGTTGTAAGTTTTGTAAGCATTCTTAAACAAGTAGCTGAGCGCAGATTGCCGAAGAGTTATGATTACCATCAGATGCCGGCTCCATTCATACAGATCAAATTATTGAAAATTCTTGCATTACTGGGTGCTGGCGACAGGCAAGCAAGCGAACACATGTATACTGTTGTTGGGGATTTATTTAAGAAGTATGATCCTTTGAGTAATATAGGAAATGCTGTACTTTACCAAAGTATATGCTGCGTTGCTTCTATTTTCCCGAATCCTAAGTTGCTGGAAGCTGCTGCTGACGCAATCTCTAGATTTTTGAAGAGCGATAGTCATAATCTAAAATACATGGGCATTGATGCACTTGGTCGACTTATAAAGCTAAGTCCAGATATTGCAGAACAACATCAGCTAGCTGTGATTGATTGTATGGAGGATCCTGATGATACCTTAAAGAGAAAAACATTTGAATTATTGTATACTATGACCAGGTCCACCAATGTGGAAGTGATTGTCAATCGCATGATTGAATATATGATAAGCATTACTGACCATCATTATAAGACATATATTGCATCGAGATGTGTTAAACTAGCCGAGGAATTTGCACCTAATAACCATTGGTTCATTCAGTATGATCCTTTGAGTAATATAGGAAATGCTGTACTTTACCAAAGTATATGCTGCGTTGCTTCTATTTTCCCGAATCCTAAGTTGCTGGAAGCTGCTGCTGACGCAATCTCTAGATTTTTGAAGAGCGATAGTCATAATCTAAAATACATGGGCATTGATGCACTTGGTCGACTTATAAAGCTAAGTCCAGATATTGCAGAACAACATCAGCTAGCTGTGATTGATTGTATGGAGGATCCTGATGATACCTTAAAGAGAAAAACATTTGAATTATTGTATACTATGACCAGGTCCACCAATGTGGAAGTGATTGTCAATCGCATGATTGAATATATGATAAGCATTACTGACCATCATTATAAGACATATATTGCATCGAGATGTGTTAAACTAGCCGAGGAATTTGCACCTAATAACCATTGGTTCATTCAGACCATTAATAAAGTTTTTGAACACGCTGGAGATTTGGTGAATATTAAAGTTGCACATGATTTGATGCGGTTGATTGCCGAAGGATTCAGAGAGGATGGTGATACAGTAGATAACCAGCTGAGATCATCTGCTGTGGATTCATATTTGCGCATTATTGGGAACCCGAAGCTTCCATCTGCATTTCTTCAGGTCATCTGTTGGGTTCTGGGAGAGTATGGGACTGCTGATGGAAAGTACTCTGCTTCGTACATTGCTGGAAAGCTTTGTGACATAGCTGAAGCATATTCAAACGATGCAAGTGTCAAGGCTTATGCAGTGACAGCTCTTATGAAAGTCTATGCATTTGAGAAGATGTCCGGGAGAACAGTGGATATGCTACCTGAGTGTCAATCTTTGATTGAAGAATTATCAGCATCCCACTCAACAGATTTGCAGCAACGTGCGTATGAATTGCAGGCCACCATAGGTTTAGATGCTCAAGCTATTGAGAATATAATGCCAGCTGATGCAAGCTGTGAAGATATTGAGATTGATAACGATCTTTCATTCCTCAACAATTATGTGCAAGAATCACTAGAAAATGGTGCACAGCCTTATGTTCCTGAGAGTCAGCGATCGAGGATGTTTGACGTTAGCGCCACCAAAAGTCTTGACCAACGTGAAACTGTGTCACACAGCCTGAGGTTCGAGGCTTACGAGCTTACAAGGCCTCCAGTGCCATCAAGTATTCCTCCTATGTCACCTGCAATCTCAGCTGAACTGGTTCCTGTTTCCGAACCATATCATCCTAGGGAGACGCACCAATCTACATCAGATCCCTCTGTATCAGATGATGGTTCATCTCAAGTCAAGTTACGACTTGATGGTGTTCAGAAAAAATGGGGCAGGCCATCGTATTCTTCTCCTGGTTCATCTGTGTCAACTTCTAGTCCTCCTCAGAAAGCAGTAAATGGGGTTTCGCAAGTAGACGGTACCAGTACTGTAAGCTCAAAACCCACGACTTATACCTCAAGGACTGCAGAACCTGAAATTCCTGCAGAGAAACAAAAGCTTGCTGCTTCCTTATTTGGAGGTTCATCCAAAATTGAAACAAGGGCACCTTCTGCTGCCCATAAAACTACAAAGACACACCATGGTGCCAATAAGGTGCAGGCAGCCAAGACGACCATTGTGCCTGCAGAAGTCCCTCCTCCTGACCTCCTCGACTTTGGCGAACCGACTGTCACCAGTAGTGCACCATCTATTGATCCATTTAAGCAGTTGGAAGGGCTTCTTGATGAAAGCCAGGCTTCTTCTACCGAGAATCCTAAAGCTGTTGGAATCAATAAACAACCAGAACTTATGGGATTATATTCCGGGACAACCATGAGTGGACAAGGAAGCAACGTTGTGAATCTCATTTCCTCCAACAAGGATAATTCGGATTTGACTTCTGAATTGTCGAAAGTGACCGCAAAGACGGTTCAGGGACAAACTATGGTTTCAAATATGGCACAATTTAGCAAGGGCCCCAATGTGAAGGCATCATTGGAAAAGGATGCAGTCGTTAGGCAGATGGGTGTGACCCCTACCAGTCGGAATCCAAACTTGTTCAAAGACTTACTTGGCTAA 3357 43.01 MEQLKTIGRELAMGSQGGFGQSKEFLDLIKSIGEARSKAEEERIIIQEMENLKRRLTDPDIPKRKMKEYIIRLVYVEMLGHDASFGYIHAVKMTHDDNLLLKRTGYLAVTLFLNEDHDLIILIVNTIQKDLKSDNYLIVCAALNAVCRLINEETIPAVLPQVVELLGHSKEAVRKKAIMALHRFHQKSPSSISHLLSNFRKRLCDNDPGVMGATLCPLFDLITTDVHSYKDLVVSFVSILKQVAERRLPKSYDYHQMPAPFIQIKLLKILALLGAGDRQASEHMYTVVGDLFKKYDPLSNIGNAVLYQSICCVASIFPNPKLLEAAADAISRFLKSDSHNLKYMGIDALGRLIKLSPDIAEQHQLAVIDCMEDPDDTLKRKTFELLYTMTRSTNVEVIVNRMIEYMISITDHHYKTYIASRCVKLAEEFAPNNHWFIQYDPLSNIGNAVLYQSICCVASIFPNPKLLEAAADAISRFLKSDSHNLKYMGIDALGRLIKLSPDIAEQHQLAVIDCMEDPDDTLKRKTFELLYTMTRSTNVEVIVNRMIEYMISITDHHYKTYIASRCVKLAEEFAPNNHWFIQTINKVFEHAGDLVNIKVAHDLMRLIAEGFREDGDTVDNQLRSSAVDSYLRIIGNPKLPSAFLQVICWVLGEYGTADGKYSASYIAGKLCDIAEAYSNDASVKAYAVTALMKVYAFEKMSGRTVDMLPECQSLIEELSASHSTDLQQRAYELQATIGLDAQAIENIMPADASCEDIEIDNDLSFLNNYVQESLENGAQPYVPESQRSRMFDVSATKSLDQRETVSHSLRFEAYELTRPPVPSSIPPMSPAISAELVPVSEPYHPRETHQSTSDPSVSDDGSSQVKLRLDGVQKKWGRPSYSSPGSSVSTSSPPQKAVNGVSQVDGTSTVSSKPTTYTSRTAEPEIPAEKQKLAASLFGGSSKIETRAPSAAHKTTKTHHGANKVQAAKTTIVPAEVPPPDLLDFGEPTVTSSAPSIDPFKQLEGLLDESQASSTENPKAVGINKQPELMGLYSGTTMSGQGSNVVNLISSNKDNSDLTSELSKVTAKTVQGQTMVSNMAQFSKGPNVKASLEKDAVVRQMGVTPTSRNPNLFKDLLG 1118
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3686990 3696812 + Cp4.1LG06g06050.1 Cpe06g00599 471379

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00599 1118 MobiDBLite consensus disorder prediction 843 925 - -
Cpe06g00599 1118 SUPERFAMILY ARM repeat 442 784 IPR016024 -
Cpe06g00599 1118 Gene3D - 18 438 IPR011989 -
Cpe06g00599 1118 PANTHER ADAPTIN, ALPHA/GAMMA/EPSILON 440 1114 - -
Cpe06g00599 1118 MobiDBLite consensus disorder prediction 879 922 - -
Cpe06g00599 1118 Coils Coil 32 52 - -
Cpe06g00599 1118 SUPERFAMILY ARM repeat 22 438 IPR016024 -
Cpe06g00599 1118 PANTHER AP-4 COMPLEX SUBUNIT EPSILON-1 13 438 - -
Cpe06g00599 1118 PANTHER AP-4 COMPLEX SUBUNIT EPSILON-1 440 1114 - -
Cpe06g00599 1118 PANTHER ADAPTIN, ALPHA/GAMMA/EPSILON 13 438 - -
Cpe06g00599 1118 MobiDBLite consensus disorder prediction 845 863 - -
Cpe06g00599 1118 Gene3D - 439 750 IPR011989 -
Cpe06g00599 1118 Pfam Adaptin N terminal region 442 736 IPR002553 GO:0006886|GO:0016192|GO:0030117
Cpe06g00599 1118 Pfam Adaptin N terminal region 42 438 IPR002553 GO:0006886|GO:0016192|GO:0030117
Cpe06g00599 1118 PIRSF AP4_epsilon 439 853 IPR017109 GO:0015031|GO:0030124
Cpe06g00599 1118 PIRSF AP4_epsilon 838 930 IPR017109 GO:0015031|GO:0030124
Cpe06g00599 1118 PIRSF AP4_epsilon 11 439 IPR017109 GO:0015031|GO:0030124
Cpe06g00599 1118 PIRSF AP4_epsilon 902 1118 IPR017109 GO:0015031|GO:0030124
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00599 K12400 AP4E1; AP-4 complex subunit epsilon-1 - csv:101215149 1158.28
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe02g00578 Cpe06g00599 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00435 Cpe-Chr5:2491572 Cpe06g00599 Cpe-Chr6:3686990 7.22E-09 dispersed
Cpe06g00599 Cpe-Chr6:3686990 Cpe16g00489 Cpe-Chr16:5956669 1.41E-19 dispersed
Cpe02g00578 Cpe-Chr2:3445287 Cpe06g00599 Cpe-Chr6:3686990 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g954 . . . . . . . . . . . . . . . . Cpe02g00578 . . . . . . . . . . . . . . . . . Cone9ag0348 . . . . Blo03g00913 . . . . . . . . . . . . . . . Cpe06g00599 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008303 1 1 1 0 1 0 2 1 0 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00599 Cpe_Chr06 FPKM 0.65641 1.221513 0.236403 0.223693 0.338176 0.644223 0.221137 1.45201 1.607638 1.62534