Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00601 ATGGTGTGGGGAAATGGGTGCCAAGATGGAGTCAACACAAGGCCTCTGTTCTTGGTGTTCTATGCGACCGTCGCTGCCGGAATCGTGTTGTCGTCGTTGTATGTTTTTTCGGCTGTTTACTCGTCTTCCAATTTTGTGTCTGGTTTCAGCTCCTCTTGGCTTTCGTCTACTTCTGGTGAATTTAACAATTCCAATTCAACTCTCATCAAGGATCAAACACCAAATATATCACAACCAGATGTTCACAACAAAGGGGAAAGACCAATTTGGGAAGCTCCAGACACCAAAAACATGCCATCTCCATCGACCTTTCGGCTAACCAAGGAGCTCGTTCAACGACACGTAAAAGATAACGTAATAATAGTTACATTCGGTAACTATGCATTTTTAGACTTCATTCTCAATTGGGTTAAGCATTTGACAGATCTTGATCTTTCTAATCTTCTTGTTGGTGCAATGGACACCAAATTGTTGGAAGCTTTGTATTGGAAAGGTATTCCTGTTTTCGACATGGGAAGTCATATGAGCACGGTGGATGTTGGCTGGGGATCGTCGACGTTTCATAAGATGGGAAGAGAAAAAAATCCGCTCCCATATCTCGCTCGTTACCCCGAAGCAGATGTCTTATCTTCAAGTGATCAGGTCATACCAACCGTGGTCGATGACAAGTTGGATATTTGGAACGAAGTTTCGGGTGCCTTAAATATTGGAATTTTCCACTGGCGGCCTACACGAGCATCAAAAAAACTGGCTAAGGAGTGGAAGGAAATGCTCCTAGCTGATGACAAGATTTGGGACCAAAATGGTTTCAACGAACTCGTTCGTAAGAAATATGGACCATCGGTCGATGAAGACGGTGGACTCGTATACGCTTATGATGGTAATCTCAAGCTAGGAATTTTACCTGCAAGTATTTTCTGTAGTGGACACACCTTCTTTGTCCAGGCAATGTATCAACAATTTAGATTGGAGCCATATGCTGTTCATACTACATTCCAGTACGCGGGTACTGAAGGAAAGCGCCATAGACTGCGTGAGGCCATGGTTTTCGATGATCCACCGGAGTACTTCGATGCACCAGGAGGTTACCTATCGTTTAAGCCATCGATCCCGAAGTCGCTATTACTTGAAGGAGAGCATGACCTTGATACACATTTTAGGCTTATGAACTACCAGTTGAAACAAATCAGGACTGCACTTGCTATTGCTTCACTATTGAATCGTGTCCTGATAATGCCTCCACTGTGGTGCCGGTTAGACAAGCTATGGTATGGACATCCTGGAGTTCTTCAGGGTTCTGTGACTCGACAGCCTTTTATTTGCCCGTTGGACCACGTTTTTGAGATCAATGTGATGTTAAAAGAATTACCAATGGAGGAGTTTGGCCCAGGAATTAACTTTAGAGAGTATTCTTTTTTGGACAATCCGTTGCTCCCCAAACAGGTGAAAGAATCATGGCTTGATGTTCAGCTTTGTAAACAAGAAAGTGAAGGTTGTCATGCATCAAATGATACAGTACTACCAGGTGTGCTTAAATTTCCTAAGGGCAGCAATGAAGACACGTTCAAGGCAATATTTTCCAAATTCAAGGATGTCAAAGTCATCCAGTTCTCCACAATGCAAGATGCCTTCCCTGGTTTCTCCGATAAGAAAAGGGAAGAGAAGTTCAGGAACCGTGTCAAGCGTTACGTTGGCATATGGTGTTGTGTGGAGAATGCTGCACCAGGCCACGTATTTTATGACATGTACTGGGATGAGAAACCTGATTGGAAACCGCACCCACCTCGAACGCCCGAGGAAGATCGACCTCCTTTATAA 1818 43.89 MVWGNGCQDGVNTRPLFLVFYATVAAGIVLSSLYVFSAVYSSSNFVSGFSSSWLSSTSGEFNNSNSTLIKDQTPNISQPDVHNKGERPIWEAPDTKNMPSPSTFRLTKELVQRHVKDNVIIVTFGNYAFLDFILNWVKHLTDLDLSNLLVGAMDTKLLEALYWKGIPVFDMGSHMSTVDVGWGSSTFHKMGREKNPLPYLARYPEADVLSSSDQVIPTVVDDKLDIWNEVSGALNIGIFHWRPTRASKKLAKEWKEMLLADDKIWDQNGFNELVRKKYGPSVDEDGGLVYAYDGNLKLGILPASIFCSGHTFFVQAMYQQFRLEPYAVHTTFQYAGTEGKRHRLREAMVFDDPPEYFDAPGGYLSFKPSIPKSLLLEGEHDLDTHFRLMNYQLKQIRTALAIASLLNRVLIMPPLWCRLDKLWYGHPGVLQGSVTRQPFICPLDHVFEINVMLKELPMEEFGPGINFREYSFLDNPLLPKQVKESWLDVQLCKQESEGCHASNDTVLPGVLKFPKGSNEDTFKAIFSKFKDVKVIQFSTMQDAFPGFSDKKREEKFRNRVKRYVGIWCCVENAAPGHVFYDMYWDEKPDWKPHPPRTPEEDRPPL 605
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3703143 3710805 - Cp4.1LG06g06120.1 Cpe06g00601 471381

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00601 605 PANTHER BNAA04G20580D PROTEIN 2 194 - -
Cpe06g00601 605 PANTHER ARABINOSYLTRANSFERASE XEG113 2 194 - -
Cpe06g00601 605 PANTHER ARABINOSYLTRANSFERASE XEG113 194 605 - -
Cpe06g00601 605 MobiDBLite consensus disorder prediction 72 94 - -
Cpe06g00601 605 Pfam Nucleotide-diphospho-sugar transferase 194 344 IPR005069 -
Cpe06g00601 605 PANTHER BNAA04G20580D PROTEIN 194 605 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00601 K20784 XEG113; arabinosyltransferase [EC:2.4.2.-] - csv:101203732 1102.43
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe02g00576 Cpe06g00601 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00576 Cpe-Chr2:3432006 Cpe06g00601 Cpe-Chr6:3703143 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g959 . . . . . . Bma07g01214 . . . . . . . . . Cpe02g00576 . . . . . . . . . . . . . . . . . Cone9ag0345 . . . . Blo03g00915 . . Bda09g00473 Bpe08g01056 . . . . . . . . . . . Cpe06g00601 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003980 2 1 2 2 2 0 3 1 0 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 1 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00601 Cpe_Chr06 FPKM 12.262369 12.813804 16.715322 16.829329 11.793404 13.654676 13.738161 16.308628 16.139669 19.802654