Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00602 ATGGCCATTTCAGATGAAGAAGACGAGTTGTTGGCACAATTTCTTGAAACAGAGGTTCTCTTGGAGGTCTCTGATAAGGAAGAGGGGAACGTACAGGAGGAACCACAACCTAAAAGAGCTCGAATCGAACAGATTAACCCTAACGAACAAAGAGAGGTAGCTTCCGTTACTACTTCGTCCTCTCAATTCAGTGGCGTCGTTCCCGGGAGAATTGAGACCGGAATTTTCAGTCAAATTCCTTCGGAGCTCTTCCGCCATATCCTCAAGTTTCTCTCATCAGAGGATCTGATTTCTTGTTCACTGGTTTGTCGATTTTTAAATTCTGTGGCGTCTGATGAATCATTATGGCGAAGATTATATTGTCTGCGTTGGGGTCTGGTTCCCAAGACCAAGAAATTGCGCCAATGTCCTTGGAAAAAACTATATATTCAGCGTGACGAAGAGGATATGACTCAACTGGTTCGAGATTGTTCTTCCGAGTTTAAAGAGTACTACATCCAAATGCAAGCAGCAAAAAGAAGTCAAGCTCCTCTTCCTTCTCAGGTGCAGGACGACCAAATAATTCTCGACAGGACTGTGGCCGATCAAGTATCTACATGGAAAAGCAGCAGGGGGTTGACTGACAAGATAGTCATAGATCATACTTGTTCTGGAGAAACATGTACATATTACCAAGTTGGTGATGCATTTGTATGTGAAAAGACTGGACTTGTTCATGTATGTGATGACACTTGCCGAGAAGTCGTTATGGATCCGAACGATGAACAACTTGTCTGCAGAATATCTGGACACTGCTTTGATACTCTACTTTTTCCAGACTCTATGGAACCGGATACTGAACTGCAACAAGCTGGTGTAACCGACGAGGCTGAGGCGGAACCGTTCATGGGTTCGGGTCGTTTTGCTCGAGCTTACTTGCTGGGGTACAATTGTGCCGACGAGGCCGAGCTAGAAGCTACTTTGAGGTTCTGCTGA 975 44.92 MAISDEEDELLAQFLETEVLLEVSDKEEGNVQEEPQPKRARIEQINPNEQREVASVTTSSSQFSGVVPGRIETGIFSQIPSELFRHILKFLSSEDLISCSLVCRFLNSVASDESLWRRLYCLRWGLVPKTKKLRQCPWKKLYIQRDEEDMTQLVRDCSSEFKEYYIQMQAAKRSQAPLPSQVQDDQIILDRTVADQVSTWKSSRGLTDKIVIDHTCSGETCTYYQVGDAFVCEKTGLVHVCDDTCREVVMDPNDEQLVCRISGHCFDTLLFPDSMEPDTELQQAGVTDEAEAEPFMGSGRFARAYLLGYNCADEAELEATLRFC 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3711305 3715228 + Cp4.1LG06g06040.1 Cpe06g00602 471382

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00602 324 PANTHER F-BOX ONLY PROTEIN 3 66 265 - -
Cpe06g00602 324 PANTHER F-BOX ONLY PROTEIN 3 266 324 - -
Cpe06g00602 324 Pfam F-box-like 77 121 IPR001810 GO:0005515
Cpe06g00602 324 ProSiteProfiles F-box domain profile. 73 119 IPR001810 GO:0005515
Cpe06g00602 324 SUPERFAMILY F-box domain 61 145 IPR036047 GO:0005515
Cpe06g00602 324 Gene3D - 62 151 - -
Cpe06g00602 324 SMART fbox_2 79 119 IPR001810 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00602 - - - csv:101203483 607.446
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe02g00575 Cpe06g00602 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe13g00282 Cpe-Chr13:2223161 Cpe06g00602 Cpe-Chr6:3711305 1.82E-07 transposed
Cpe02g00575 Cpe-Chr2:3426648 Cpe06g00602 Cpe-Chr6:3711305 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g964 . . . Bda08g00438 . . . . . . . . . . . . Cpe02g00575 . . . . . . . . . . . . . . . . . Cone9ag0343 . . . . . . . . . . . . . . . . . . . . Cpe06g00602 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007923 1 2 1 1 1 0 2 1 0 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 2 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00602 Cpe_Chr06 FPKM 6.484494 7.895102 11.145024 10.627027 12.40252 13.536842 12.134409 7.900993 7.293553 7.561874