Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00605 ATGGGAAGGGGAAAGATTGAAATCAAGAGGATTGAGAACTCAAGCAACAGGCAAGTGACCTATTCAAAGAGAAGAAATGGTATCATCAAGAAGGCCAAAGAGATCACTGTTCTTTGTGATGCTCAAGTTTCTCTTGTGGTGTTTGCTAGCTCTGGCAAAATGCATGAGTATTGTAGCCCTTCTACACCGTTGATTGATATCTTGGATAAGTATCATAAGCAATCGGGGAAGAGGCTGTGGGATGCTAAACATGAGAATTTAAGCAATGAAATGGATAGGGTTAAGAAAGAAAATGACAACATGCAGATTGAGCTCAGGCGTTTGAGAGGAGAAGATATAACATCTTTGAACTACAAGGAGCTAATGGCTCTTGAAGAAGCCCTTGAAAATGGCCTTACTGGTGTTCGTGAGAAGCAGTCGGAGCTCATGAAGATGATGAGGACAAATGAAAGAATGATGGAAGAAGAGAACAAGCGCCTCAATTATGAGCTGTACCAAAAGGAGATGGTAGCAATGGGAGATGGTGTGGATAATGGATATAATCAAAGGATGAGAGATTTCAATTCTCAAATGCCCTTTGCGTTCAGAGTGCAGCCCATTCAGCCAAACCTACAAGAAAGGAACAATTAA 630 41.27 MGRGKIEIKRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAQVSLVVFASSGKMHEYCSPSTPLIDILDKYHKQSGKRLWDAKHENLSNEMDRVKKENDNMQIELRRLRGEDITSLNYKELMALEEALENGLTGVREKQSELMKMMRTNERMMEEENKRLNYELYQKEMVAMGDGVDNGYNQRMRDFNSQMPFAFRVQPIQPNLQERNN 209
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3725574 3728710 - Cp4.1LG06g06100.1 Cpe06g00605 471385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00605 209 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cpe06g00605 209 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cpe06g00605 209 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cpe06g00605 209 ProSiteProfiles K-box domain profile. 84 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cpe06g00605 209 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 207 - -
Cpe06g00605 209 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cpe06g00605 209 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677|GO:0046983
Cpe06g00605 209 Coils Coil 135 155 - -
Cpe06g00605 209 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Cpe06g00605 209 PANTHER FLORAL HOMEOTIC PROTEIN PISTILLATA 1 207 - -
Cpe06g00605 209 Pfam K-box region 82 163 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cpe06g00605 209 Gene3D - 13 100 IPR036879 GO:0003677|GO:0046983
Cpe06g00605 209 Coils Coil 77 111 - -
Cpe06g00605 209 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cpe06g00605 209 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cpe06g00605 209 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe02g00571 Cpe06g00605 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00096 Cpe-Chr2:486669 Cpe06g00605 Cpe-Chr6:3725574 1.38E-46 dispersed
Cpe06g00084 Cpe-Chr6:415818 Cpe06g00605 Cpe-Chr6:3725574 1.04E-35 dispersed
Cpe06g00605 Cpe-Chr6:3725574 Cpe19g01204 Cpe-Chr19:8098204 3.99E-39 dispersed
Cpe02g00571 Cpe-Chr2:3406131 Cpe06g00605 Cpe-Chr6:3725574 6.90E-102 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49670 PF01486 K-box 7.50E-18 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00605 K09264 - csv:101222239 389.808