Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00607 ATGTTGAAGCCGAAGCCGTTCGCCGGAGTCAATGTGTTCGTGTCCCGCAATCTTGTCGCTCCGGAGATATTCGACGCTCTTCACGACGCTTTGAAGCAGAATGGGGCTGAGGTTTTCCTCTGTTGTGATCCTGCTCGAAACGGCCCTAAAGATTATCATGTTATCTCATCAGCCGATCACGAAAAGTTTGAGGATCTTCGTTCGAAGGGATGCAATTTGTTAGGTCCTCAGTGCGTGATGTCATGTGCAAAAGAGAACAGACCCCTTCCTCAGCAGGGTTTTACTTGCTGCCTTGCTATGGATGGTGTGAAAATTCTTGCATCTGGTTTTCAGGCAGATGAAAAGGTTGAGATAGGGAAGTTAGTTAATGCAATGGGAGGAGTATTGCAGACGAGAGCATCTGCAGATGTCAGCTTTGTCATCGCGAAGAATGCTTTGGCTGCAAAATACAAGAATGATTGTCTTGAACTGAAGGTGGTGGATCAGTTAGGCATGCTTGGACATTGGGTGTGGGCACTTAACATTTCAAAGAAACCTATTGTCACAATTGCTTGGTTACAGCAGTGCTGGATTGAACATCGTGTAGTGCCACAGGATGGATATCGAGTCCTTCCATTTTCTGGATTGAATATTTCGGTATCTAGAATTCCCGCAGATGAGCGCAAGGAGATCGAAAAGCTTATCTTGCAAAATGGTGGAAGATATTCTGCCGATCTTACAAGAAAGTGTACACATTTGATATGTGACAAGTACAAGGTTGCACGAACATGGGGTCATATCAATATTGTTACTCGGAAATGGTTTGATCAGTCCATAGTTAGAAGAGCATGTCTTAATGAGGAGTTGTACCCTGTTGGTAGCGTTTCTGCAACTTCAAATAAAATGGCAAGGGGTTGCTTGACTTCTCACAATAGCCAAGATAAGGTTAATGGGAACGTGCAAGCTGCACCGTCCTCATTTATTGCTGATTCAAATTTCTCAGCTGTTTCTGGCCCTGGGTTTTCAGATATGGATTTAGAAGCTACTCTTTCACAGAGCACGTCTATGTTTTCAGATGCTTCTCATTTTATAAATGAGGTTGATGTTGAAGTGCCAGTTACAATGGCAAAGAACGAAGAAAACACTGAAAATTGCATTGCAAATGACTTTCAATCTGAAGACAACGACCTATATTTGTCAGCATGTAGAATAAAAGTTGTTGGGTTTGAAGCTTCTGAGATGCGGAAGATTGTGAATATGATTCTCAGAGGTGGAGGCTCCCGGTACATGCTGTTCAATGACAAGTTAACACATATAATTGTTGGAAATCCGTCAGAAATGGAGAAAAAAGAGGTTAGAGACATTGCAGCTTCAGGTGTCATCCATGTGGTTAGAACCACCTGGCTTGAGGATTGTGATCGTCAGAAGAAGGAGATCCCCGTTCTTGGCAGACACATGGCCTATGATGAACTTATCCCTAAAGCATCCTGTAAAACAAGCACCATTGTTATGGATCGGAATAAAGTTCCTAATGTTCATCCAATCATTCCATTGAATGGGCTAGAAGGAAATATTCATGCTAAAATTGGAAAGACATCAATGATAGAGGAAAGAATTCAAGAAAAAAGTGAAGCAAATGTGGGTGGAGACAAGACCACAAAATTGTCTCAGAAAAGCCAACATTCTGTACCAAATGGTATGAACAAGAGTCAAGAAAAGTTGCGGCGTGATGTCATGGTTCCAAATGGGAAGTCATCATGTGTTTATAAGGGGAAAATATTTTGCTTTTCGAGTTCCTTTCCAGAAGATCGGAGAGCTGAAATTGTTGAATGGATAAATCAAGGGGGAGGGGAAGTGGTTGAGGATCATACGAAACAGAAAGTGCACTTCACAGTTGGATGTCATGGTGTGATACCAAGGAGTACAGATGTTCATACTACATACGTGTCAAGTCATTGGGTCCGATCATGTTTAGAGGATGGATGTTTGTCGGATACCAATGAGCACATTCTCTATTCTCCACTTCCTTGTTGTGTTCCTTTGCCTGGGTTTGAAAGAATACGGTTCTGTGTTTCACAATATGAAGACAAAGATAGAGTCTTGTTAAGAAATCTGTGTTTTGTACTTGGGGCCAAGTTCGTGGAGAAGTTGACAAAGAAGGTAACCCATCTAATATGCAAGTTTTCCGATGGGCCAAAGTATGAGGCTGCTTGTAAATGGGGAATACATTCAGTTACAGCTGAATGGATCTATGAGTGTGTCAGACAGAGTAAGCTTGTTTCTCTTGATTTGTATCGTCCAAAAGAAGTTACAGCTCAAGATAGAGAGGCAGGCTTATGTACTGTCAGTCAGTTTCCTACACAAGCTGGCCAAATGATAGCCGGTGAAGGTGAATCCCAGTTCCCTACCCATTCTGCTATCTTGAGAGATCAATCAGCTGGAACTAACAGTAGCTCTATGGGAGAAGTTGAACAAATAAGTTTTACTAATAAAAAGCGGAAATTCCTTGACGAACCTATACAAAAACGTCCTATATTTGTTGGAAAGAGTCTCACTCATTTTGACTGCAATTTGAACTCCACAAGAGAAACTACATCAAAATCTTCTGTAGTAACTTCACACGTTCCTGATGTTGCTGCCGCGATTGAGGACTTGTTGGAGCAGACGAGTAAGATTCATGATCAGAAGTCACCTGGAAAGACTGGCTGCGACAAAAGTATTTTCCCGCCCGACTGTTCCGTCATTGGTCAAGACCATTCAGAAGCTCCTCCAGTTGGTGGTTCATCTAACCAGTGGTTAAAAAGCTTTAAAGATGGTGGTAGGACTAGGGGCCGCGCTGTGAAGGTTTGA 2829 42.31 MLKPKPFAGVNVFVSRNLVAPEIFDALHDALKQNGAEVFLCCDPARNGPKDYHVISSADHEKFEDLRSKGCNLLGPQCVMSCAKENRPLPQQGFTCCLAMDGVKILASGFQADEKVEIGKLVNAMGGVLQTRASADVSFVIAKNALAAKYKNDCLELKVVDQLGMLGHWVWALNISKKPIVTIAWLQQCWIEHRVVPQDGYRVLPFSGLNISVSRIPADERKEIEKLILQNGGRYSADLTRKCTHLICDKYKVARTWGHINIVTRKWFDQSIVRRACLNEELYPVGSVSATSNKMARGCLTSHNSQDKVNGNVQAAPSSFIADSNFSAVSGPGFSDMDLEATLSQSTSMFSDASHFINEVDVEVPVTMAKNEENTENCIANDFQSEDNDLYLSACRIKVVGFEASEMRKIVNMILRGGGSRYMLFNDKLTHIIVGNPSEMEKKEVRDIAASGVIHVVRTTWLEDCDRQKKEIPVLGRHMAYDELIPKASCKTSTIVMDRNKVPNVHPIIPLNGLEGNIHAKIGKTSMIEERIQEKSEANVGGDKTTKLSQKSQHSVPNGMNKSQEKLRRDVMVPNGKSSCVYKGKIFCFSSSFPEDRRAEIVEWINQGGGEVVEDHTKQKVHFTVGCHGVIPRSTDVHTTYVSSHWVRSCLEDGCLSDTNEHILYSPLPCCVPLPGFERIRFCVSQYEDKDRVLLRNLCFVLGAKFVEKLTKKVTHLICKFSDGPKYEAACKWGIHSVTAEWIYECVRQSKLVSLDLYRPKEVTAQDREAGLCTVSQFPTQAGQMIAGEGESQFPTHSAILRDQSAGTNSSSMGEVEQISFTNKKRKFLDEPIQKRPIFVGKSLTHFDCNLNSTRETTSKSSVVTSHVPDVAAAIEDLLEQTSKIHDQKSPGKTGCDKSIFPPDCSVIGQDHSEAPPVGGSSNQWLKSFKDGGRTRGRAVKV 942
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3737758 3745954 + Cp4.1LG06g06060.1 Cpe06g00607 471387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00607 942 CDD BRCT 103 189 - -
Cpe06g00607 942 MobiDBLite consensus disorder prediction 913 942 - -
Cpe06g00607 942 MobiDBLite consensus disorder prediction 535 564 - -
Cpe06g00607 942 Gene3D BRCT domain 367 475 IPR036420 -
Cpe06g00607 942 ProSiteProfiles BRCT domain profile. 387 479 IPR001357 -
Cpe06g00607 942 SUPERFAMILY BRCT domain 389 473 IPR036420 -
Cpe06g00607 942 ProSiteProfiles BRCT domain profile. 577 664 IPR001357 -
Cpe06g00607 942 SUPERFAMILY BRCT domain 583 666 IPR036420 -
Cpe06g00607 942 SMART BRCT_7 579 654 IPR001357 -
Cpe06g00607 942 SMART BRCT_7 97 193 IPR001357 -
Cpe06g00607 942 SMART BRCT_7 203 275 IPR001357 -
Cpe06g00607 942 SMART BRCT_7 389 469 IPR001357 -
Cpe06g00607 942 SMART BRCT_7 674 750 IPR001357 -
Cpe06g00607 942 SMART BRCT_7 4 86 IPR001357 -
Cpe06g00607 942 ProSiteProfiles BRCT domain profile. 677 760 IPR001357 -
Cpe06g00607 942 SUPERFAMILY BRCT domain 673 761 IPR036420 -
Cpe06g00607 942 CDD BRCT_TopBP1_rpt2_like 205 272 - -
Cpe06g00607 942 Pfam twin BRCT domain 209 267 IPR001357 -
Cpe06g00607 942 Pfam twin BRCT domain 103 151 IPR001357 -
Cpe06g00607 942 Pfam twin BRCT domain 681 742 IPR001357 -
Cpe06g00607 942 SUPERFAMILY BRCT domain 57 203 IPR036420 -
Cpe06g00607 942 Gene3D BRCT domain 675 767 IPR036420 -
Cpe06g00607 942 PANTHER DNA REPLICATION REGULATOR DPB11-RELATED 7 929 - -
Cpe06g00607 942 ProSiteProfiles BRCT domain profile. 201 285 IPR001357 -
Cpe06g00607 942 ProSiteProfiles BRCT domain profile. 100 203 IPR001357 -
Cpe06g00607 942 Gene3D BRCT domain 574 670 IPR036420 -
Cpe06g00607 942 Gene3D BRCT domain 205 285 IPR036420 -
Cpe06g00607 942 SUPERFAMILY BRCT domain 175 286 IPR036420 -
Cpe06g00607 942 MobiDBLite consensus disorder prediction 542 562 - -
Cpe06g00607 942 CDD BRCT_TopBP1_rpt2_like 675 750 - -
Cpe06g00607 942 Gene3D BRCT domain 98 204 IPR036420 -
Cpe06g00607 942 Gene3D BRCT domain 32 94 IPR036420 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe02g00570 Cpe06g00607 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00696 Cpe-Chr3:4213825 Cpe06g00607 Cpe-Chr6:3737758 1.42E-06 dispersed
Cpe06g00607 Cpe-Chr6:3737758 Cpe12g00897 Cpe-Chr12:7781667 7.48E-09 dispersed
Cpe12g00711 Cpe-Chr12:6682093 Cpe06g00607 Cpe-Chr6:3737758 5.58E-07 transposed
Cpe02g00570 Cpe-Chr2:3396467 Cpe06g00607 Cpe-Chr6:3737758 1.00E-08 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00607 K10728 - csv:101212525 1530.0