Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00607 ATGTTGAAGCCGAAGCCGTTCGCCGGAGTCAATGTGTTCGTGTCCCGCAATCTTGTCGCTCCGGAGATATTCGACGCTCTTCACGACGCTTTGAAGCAGAATGGGGCTGAGGTTTTCCTCTGTTGTGATCCTGCTCGAAACGGCCCTAAAGATTATCATGTTATCTCATCAGCCGATCACGAAAAGTTTGAGGATCTTCGTTCGAAGGGATGCAATTTGTTAGGTCCTCAGTGCGTGATGTCATGTGCAAAAGAGAACAGACCCCTTCCTCAGCAGGGTTTTACTTGCTGCCTTGCTATGGATGGTGTGAAAATTCTTGCATCTGGTTTTCAGGCAGATGAAAAGGTTGAGATAGGGAAGTTAGTTAATGCAATGGGAGGAGTATTGCAGACGAGAGCATCTGCAGATGTCAGCTTTGTCATCGCGAAGAATGCTTTGGCTGCAAAATACAAGAATGATTGTCTTGAACTGAAGGTGGTGGATCAGTTAGGCATGCTTGGACATTGGGTGTGGGCACTTAACATTTCAAAGAAACCTATTGTCACAATTGCTTGGTTACAGCAGTGCTGGATTGAACATCGTGTAGTGCCACAGGATGGATATCGAGTCCTTCCATTTTCTGGATTGAATATTTCGGTATCTAGAATTCCCGCAGATGAGCGCAAGGAGATCGAAAAGCTTATCTTGCAAAATGGTGGAAGATATTCTGCCGATCTTACAAGAAAGTGTACACATTTGATATGTGACAAGTACAAGGTTGCACGAACATGGGGTCATATCAATATTGTTACTCGGAAATGGTTTGATCAGTCCATAGTTAGAAGAGCATGTCTTAATGAGGAGTTGTACCCTGTTGGTAGCGTTTCTGCAACTTCAAATAAAATGGCAAGGGGTTGCTTGACTTCTCACAATAGCCAAGATAAGGTTAATGGGAACGTGCAAGCTGCACCGTCCTCATTTATTGCTGATTCAAATTTCTCAGCTGTTTCTGGCCCTGGGTTTTCAGATATGGATTTAGAAGCTACTCTTTCACAGAGCACGTCTATGTTTTCAGATGCTTCTCATTTTATAAATGAGGTTGATGTTGAAGTGCCAGTTACAATGGCAAAGAACGAAGAAAACACTGAAAATTGCATTGCAAATGACTTTCAATCTGAAGACAACGACCTATATTTGTCAGCATGTAGAATAAAAGTTGTTGGGTTTGAAGCTTCTGAGATGCGGAAGATTGTGAATATGATTCTCAGAGGTGGAGGCTCCCGGTACATGCTGTTCAATGACAAGTTAACACATATAATTGTTGGAAATCCGTCAGAAATGGAGAAAAAAGAGGTTAGAGACATTGCAGCTTCAGGTGTCATCCATGTGGTTAGAACCACCTGGCTTGAGGATTGTGATCGTCAGAAGAAGGAGATCCCCGTTCTTGGCAGACACATGGCCTATGATGAACTTATCCCTAAAGCATCCTGTAAAACAAGCACCATTGTTATGGATCGGAATAAAGTTCCTAATGTTCATCCAATCATTCCATTGAATGGGCTAGAAGGAAATATTCATGCTAAAATTGGAAAGACATCAATGATAGAGGAAAGAATTCAAGAAAAAAGTGAAGCAAATGTGGGTGGAGACAAGACCACAAAATTGTCTCAGAAAAGCCAACATTCTGTACCAAATGGTATGAACAAGAGTCAAGAAAAGTTGCGGCGTGATGTCATGGTTCCAAATGGGAAGTCATCATGTGTTTATAAGGGGAAAATATTTTGCTTTTCGAGTTCCTTTCCAGAAGATCGGAGAGCTGAAATTGTTGAATGGATAAATCAAGGGGGAGGGGAAGTGGTTGAGGATCATACGAAACAGAAAGTGCACTTCACAGTTGGATGTCATGGTGTGATACCAAGGAGTACAGATGTTCATACTACATACGTGTCAAGTCATTGGGTCCGATCATGTTTAGAGGATGGATGTTTGTCGGATACCAATGAGCACATTCTCTATTCTCCACTTCCTTGTTGTGTTCCTTTGCCTGGGTTTGAAAGAATACGGTTCTGTGTTTCACAATATGAAGACAAAGATAGAGTCTTGTTAAGAAATCTGTGTTTTGTACTTGGGGCCAAGTTCGTGGAGAAGTTGACAAAGAAGGTAACCCATCTAATATGCAAGTTTTCCGATGGGCCAAAGTATGAGGCTGCTTGTAAATGGGGAATACATTCAGTTACAGCTGAATGGATCTATGAGTGTGTCAGACAGAGTAAGCTTGTTTCTCTTGATTTGTATCGTCCAAAAGAAGTTACAGCTCAAGATAGAGAGGCAGGCTTATGTACTGTCAGTCAGTTTCCTACACAAGCTGGCCAAATGATAGCCGGTGAAGGTGAATCCCAGTTCCCTACCCATTCTGCTATCTTGAGAGATCAATCAGCTGGAACTAACAGTAGCTCTATGGGAGAAGTTGAACAAATAAGTTTTACTAATAAAAAGCGGAAATTCCTTGACGAACCTATACAAAAACGTCCTATATTTGTTGGAAAGAGTCTCACTCATTTTGACTGCAATTTGAACTCCACAAGAGAAACTACATCAAAATCTTCTGTAGTAACTTCACACGTTCCTGATGTTGCTGCCGCGATTGAGGACTTGTTGGAGCAGACGAGTAAGATTCATGATCAGAAGTCACCTGGAAAGACTGGCTGCGACAAAAGTATTTTCCCGCCCGACTGTTCCGTCATTGGTCAAGACCATTCAGAAGCTCCTCCAGTTGGTGGTTCATCTAACCAGTGGTTAAAAAGCTTTAAAGATGGTGGTAGGACTAGGGGCCGCGCTGTGAAGGTTTGA 2829 42.31 MLKPKPFAGVNVFVSRNLVAPEIFDALHDALKQNGAEVFLCCDPARNGPKDYHVISSADHEKFEDLRSKGCNLLGPQCVMSCAKENRPLPQQGFTCCLAMDGVKILASGFQADEKVEIGKLVNAMGGVLQTRASADVSFVIAKNALAAKYKNDCLELKVVDQLGMLGHWVWALNISKKPIVTIAWLQQCWIEHRVVPQDGYRVLPFSGLNISVSRIPADERKEIEKLILQNGGRYSADLTRKCTHLICDKYKVARTWGHINIVTRKWFDQSIVRRACLNEELYPVGSVSATSNKMARGCLTSHNSQDKVNGNVQAAPSSFIADSNFSAVSGPGFSDMDLEATLSQSTSMFSDASHFINEVDVEVPVTMAKNEENTENCIANDFQSEDNDLYLSACRIKVVGFEASEMRKIVNMILRGGGSRYMLFNDKLTHIIVGNPSEMEKKEVRDIAASGVIHVVRTTWLEDCDRQKKEIPVLGRHMAYDELIPKASCKTSTIVMDRNKVPNVHPIIPLNGLEGNIHAKIGKTSMIEERIQEKSEANVGGDKTTKLSQKSQHSVPNGMNKSQEKLRRDVMVPNGKSSCVYKGKIFCFSSSFPEDRRAEIVEWINQGGGEVVEDHTKQKVHFTVGCHGVIPRSTDVHTTYVSSHWVRSCLEDGCLSDTNEHILYSPLPCCVPLPGFERIRFCVSQYEDKDRVLLRNLCFVLGAKFVEKLTKKVTHLICKFSDGPKYEAACKWGIHSVTAEWIYECVRQSKLVSLDLYRPKEVTAQDREAGLCTVSQFPTQAGQMIAGEGESQFPTHSAILRDQSAGTNSSSMGEVEQISFTNKKRKFLDEPIQKRPIFVGKSLTHFDCNLNSTRETTSKSSVVTSHVPDVAAAIEDLLEQTSKIHDQKSPGKTGCDKSIFPPDCSVIGQDHSEAPPVGGSSNQWLKSFKDGGRTRGRAVKV 942
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3737758 3745954 + Cp4.1LG06g06060.1 Cpe06g00607 471387

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00607 942 CDD BRCT 103 189 - -
Cpe06g00607 942 MobiDBLite consensus disorder prediction 913 942 - -
Cpe06g00607 942 MobiDBLite consensus disorder prediction 535 564 - -
Cpe06g00607 942 Gene3D BRCT domain 367 475 IPR036420 -
Cpe06g00607 942 ProSiteProfiles BRCT domain profile. 387 479 IPR001357 -
Cpe06g00607 942 SUPERFAMILY BRCT domain 389 473 IPR036420 -
Cpe06g00607 942 ProSiteProfiles BRCT domain profile. 577 664 IPR001357 -
Cpe06g00607 942 SUPERFAMILY BRCT domain 583 666 IPR036420 -
Cpe06g00607 942 SMART BRCT_7 579 654 IPR001357 -
Cpe06g00607 942 SMART BRCT_7 97 193 IPR001357 -
Cpe06g00607 942 SMART BRCT_7 203 275 IPR001357 -
Cpe06g00607 942 SMART BRCT_7 389 469 IPR001357 -
Cpe06g00607 942 SMART BRCT_7 674 750 IPR001357 -
Cpe06g00607 942 SMART BRCT_7 4 86 IPR001357 -
Cpe06g00607 942 ProSiteProfiles BRCT domain profile. 677 760 IPR001357 -
Cpe06g00607 942 SUPERFAMILY BRCT domain 673 761 IPR036420 -
Cpe06g00607 942 CDD BRCT_TopBP1_rpt2_like 205 272 - -
Cpe06g00607 942 Pfam twin BRCT domain 209 267 IPR001357 -
Cpe06g00607 942 Pfam twin BRCT domain 103 151 IPR001357 -
Cpe06g00607 942 Pfam twin BRCT domain 681 742 IPR001357 -
Cpe06g00607 942 SUPERFAMILY BRCT domain 57 203 IPR036420 -
Cpe06g00607 942 Gene3D BRCT domain 675 767 IPR036420 -
Cpe06g00607 942 PANTHER DNA REPLICATION REGULATOR DPB11-RELATED 7 929 - -
Cpe06g00607 942 ProSiteProfiles BRCT domain profile. 201 285 IPR001357 -
Cpe06g00607 942 ProSiteProfiles BRCT domain profile. 100 203 IPR001357 -
Cpe06g00607 942 Gene3D BRCT domain 574 670 IPR036420 -
Cpe06g00607 942 Gene3D BRCT domain 205 285 IPR036420 -
Cpe06g00607 942 SUPERFAMILY BRCT domain 175 286 IPR036420 -
Cpe06g00607 942 MobiDBLite consensus disorder prediction 542 562 - -
Cpe06g00607 942 CDD BRCT_TopBP1_rpt2_like 675 750 - -
Cpe06g00607 942 Gene3D BRCT domain 98 204 IPR036420 -
Cpe06g00607 942 Gene3D BRCT domain 32 94 IPR036420 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00607 K10728 TOPBP1; topoisomerase (DNA) II binding protein 1 - csv:101212525 1530.0
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe02g00570 Cpe06g00607 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00696 Cpe-Chr3:4213825 Cpe06g00607 Cpe-Chr6:3737758 1.42E-06 dispersed
Cpe06g00607 Cpe-Chr6:3737758 Cpe12g00897 Cpe-Chr12:7781667 7.48E-09 dispersed
Cpe12g00711 Cpe-Chr12:6682093 Cpe06g00607 Cpe-Chr6:3737758 5.58E-07 transposed
Cpe02g00570 Cpe-Chr2:3396467 Cpe06g00607 Cpe-Chr6:3737758 1.00E-08 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g215 . . . . . . . . . . . Cma09g00770 . . . Cpe06g00607 . . . . . . . . . . . . . . . . Cone7ag1503 . . Lsi04g02416 Csa04g01777 . . . . . . . . . . . . Cmo09g00762 . . . Car09g00680 . Cpe02g00570 Bhi09g02711 . . . . Mch11g0853 . Cla11g01556 Cam11g1620 Cec11g1647 Cco11g1648 Clacu11g1777 Cmu11g1593 Cre11g2011 . . Chy07g00604 Cme07g00814
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe06g01023 . 106 786 Core DNA Replication Machinery Family AT4G14700 65.0 4.4e-259 891.3
Cpe06g01023 . 73 786 Core DNA Replication Machinery Family AT4G12620 65.7 1.7e-271 932.6
Cpe07g00469 . 1 276 Core DNA Replication Machinery Family AT2G37560 68.1 2.7e-109 392.5
Cpe01g01014 . 9 410 Core DNA Replication Machinery Family AT2G01120 65.8 3.4e-154 542.0
Cpe12g00375 . 3 536 Core DNA Replication Machinery Family AT4G29910 56.9 1.6e-167 586.6
Cpe11g00701 . 1 226 Core DNA Replication Machinery Family AT1G26840 73.0 1.5e-89 326.6
Cpe08g00047 . 962 1793 Core DNA Replication Machinery Family AT1G79150 58.4 2.9e-242 835.5
Cpe15g00894 . 1 368 Core DNA Replication Machinery Family AT1G79150 52.6 2.1e-102 370.9
Cpe03g00916 . 9 939 Core DNA Replication Machinery Family AT1G44900 75.2 0.0e+00 1335.9
Cpe08g00006 . 1 966 Core DNA Replication Machinery Family AT1G44900 73.4 0.0e+00 1331.6
Cpe19g01129 CCT 65 636 Core DNA Replication Machinery Family AT5G46280 81.5 2.1e-268 921.8
Cpe04g00111 CST 1 845 Core DNA Replication Machinery Family AT2G16440 74.9 0.0e+00 1179.5
Cpe15g00556 CST 1 845 Core DNA Replication Machinery Family AT2G16440 76.9 0.0e+00 1159.4
Cpe07g01135 . 1 735 Core DNA Replication Machinery Family AT2G07690 78.4 0.0e+00 1114.0
Cpe19g01218 . 7 818 Core DNA Replication Machinery Family AT5G44635 71.6 0.0e+00 1170.6
Cpe17g00747 . 11 722 Core DNA Replication Machinery Family AT4G02060 85.7 0.0e+00 1218.0
Cpe12g00890 . 8 678 Core DNA Replication Machinery Family AT4G02060 81.3 0.0e+00 1137.9
Cpe16g00653 . 30 518 Core DNA Replication Machinery Family AT2G29680 60.4 1.4e-162 570.1
Cpe16g00653 . 30 479 Core DNA Replication Machinery Family AT1G07270 58.1 2.0e-142 503.1
Cpe12g01089 . 1 593 Core DNA Replication Machinery Family AT3G25100 76.6 5.2e-257 884.0
Cpe08g01122 . 37 715 Core DNA Replication Machinery Family AT3G09660 67.0 2.4e-278 955.3
Cpe15g00364 . 16 642 Core DNA Replication Machinery Family AT2G14050 78.4 2.3e-287 984.9
Cpe16g00316 . 1 437 Core DNA Replication Machinery Family AT2G20980 51.3 2.6e-111 399.4
Cpe06g00607 CCT 7 893 Core DNA Replication Machinery Family AT1G77320 50.1 5.9e-237 818.1
Cpe17g00581 . 1 200 Core DNA Replication Machinery Family AT1G80190 66.8 7.5e-75 277.3
Cpe19g00178 . 1 145 Core DNA Replication Machinery Family AT3G12530 73.1 1.2e-61 233.0
Cpe01g02514 . 8 177 Core DNA Replication Machinery Family AT1G19080 64.1 1.7e-57 219.5
Cpe01g02514 . 8 177 Core DNA Replication Machinery Family AT3G55490 64.1 1.7e-57 219.5
Cpe03g01740 . 15 164 Core DNA Replication Machinery Family AT5G49010 66.7 5.0e-52 201.4
Cpe05g01165 . 1 1529 Core DNA Replication Machinery Family AT5G67100 59.5 0.0e+00 1731.1
Cpe09g00571 . 2 625 Core DNA Replication Machinery Family AT1G67630 63.5 1.3e-223 773.1
Cpe17g01067 . 1 359 Core DNA Replication Machinery Family AT1G67320 53.3 1.8e-130 463.4
Cpe06g00974 . 1 483 Core DNA Replication Machinery Family AT5G41880 60.2 1.7e-172 602.8
Cpe19g00507 . 47 1084 Core DNA Replication Machinery Family AT5G63960 80.4 0.0e+00 1696.4
Cpe03g00370 . 15 431 Core DNA Replication Machinery Family AT2G42120 73.1 3.6e-191 664.8
Cpe17g01067 . 1 359 Core DNA Replication Machinery Family AT1G67320 53.3 1.8e-130 463.4
Cpe05g00419 . 1 2115 Core DNA Replication Machinery Family AT1G08260 70.1 0.0e+00 2947.9
Cpe05g00419 . 9 2221 Core DNA Replication Machinery Family AT2G27120 67.0 0.0e+00 2918.3
Cpe02g01094 . 7 502 Core DNA Replication Machinery Family AT5G22110 69.0 2.1e-195 679.1
Cpe05g00456 . 1 929 Core DNA Replication Machinery Family AT5G22010 62.6 3.9e-304 1041.2
Cpe14g00835 . 1 333 Core DNA Replication Machinery Family AT1G63160 89.5 3.8e-172 601.3
Cpe10g01069 . 11 275 Core DNA Replication Machinery Family AT5G27740 65.4 7.0e-92 334.7
Cpe02g00567 . 3 323 Core DNA Replication Machinery Family AT1G21690 80.7 3.3e-144 508.4
Cpe01g02062 . 1 363 Core DNA Replication Machinery Family AT1G77470 73.9 2.6e-150 528.9
Cpe13g00630 . 1 455 Core DNA Replication Machinery Family AT1G77470 62.9 2.3e-146 515.8
Cpe11g01184 . 34 626 Core DNA Replication Machinery Family AT2G06510 69.0 2.3e-252 868.6
Cpe11g01188 . 26 618 Core DNA Replication Machinery Family AT2G06510 69.0 2.3e-252 868.6
Cpe08g00899 . 30 697 Core DNA Replication Machinery Family AT2G06510 52.1 1.1e-201 700.3
Cpe14g01003 . 34 685 Core DNA Replication Machinery Family AT2G06510 52.6 1.0e-199 693.7
Cpe04g01458 . 1 622 Core DNA Replication Machinery Family AT5G08020 67.9 3.5e-245 844.7
Cpe08g00899 . 6 804 Core DNA Replication Machinery Family AT5G45400 51.7 7.0e-231 797.7
Cpe14g01003 . 10 784 Core DNA Replication Machinery Family AT5G45400 51.6 4.8e-224 775.0
Cpe04g01458 . 1 617 Core DNA Replication Machinery Family AT5G61000 65.6 6.7e-239 823.9
Cpe08g00899 . 1 818 Core DNA Replication Machinery Family AT4G19130 53.3 4.9e-231 798.1
Cpe14g01003 . 5 771 Core DNA Replication Machinery Family AT4G19130 54.8 8.7e-228 787.3
Cpe02g00418 . 1 252 Core DNA Replication Machinery Family AT2G24490 50.2 4.2e-68 255.4
Cpe04g00203 . 1 402 Core DNA Replication Machinery Family AT5G26680 80.7 5.5e-181 630.9
Cpe03g01241 . 1 297 Core DNA Replication Machinery Family AT2G25100 66.7 1.0e-114 410.2
Cpe16g00505 . 44 785 Core DNA Replication Machinery Family AT1G08130 66.3 5.4e-278 954.1
Cpe16g00505 . 204 785 Core DNA Replication Machinery Family AT1G49250 66.6 3.6e-227 785.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003479 1 4 1 1 1 0 2 1 0 4 1 1 1 1 1 2 1 1 2 1 7 1 1 1 2 1 1 1 1 1 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00607 Cpe_Chr06 FPKM 1.041621 2.320319 8.292327 8.197592 58.718521 55.249439 58.983871 5.428508 6.801725 6.175487