Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00612 ATGCCAGCTTCTCCTTCATTCCCATCTGGGTCTCGTGGAAAATGGCGGAAGAAGAAGAGGGATTCGCAAATTGGCCGCAGAAACAACTTCCCTAATAGTAATAACAACGGCAGCAACAAGCACGAGGAGGAAGATGAAGATGAAGACCTTGCCGCGGCTGAAAATGAAGAAATGGAACGCGATAACAACGATGATTCTGAGGATCCTCAGATTAACCTTCAATCCGCGCCCAATTCGAGCCTACAGGAGCCTGAACTCCTGTCGGATGATAAAGTGCGAGTCTCCGAGTTTCCTCAGGTCGTTAAGCGGGTTGTCACTCGGCCTCACTCTTCTGTGTTGGCCGTTGTGGCAATGGAGAGGGCAAATCAGTTCGGAGAAAGTAAGGGGCTGCCTGGAAATTCATTGATTTTGGAGAATGTGTCTTATGGGCAGCTCCAAGCCCTGTCTGCTATGCCTGCGGATAGTCCGGCGTTGCTGGATCAGGAGAGGGTGGAGGCTGGCAACGCCGCCTATGTAATAACGCCTCCACCGATTATGGAGGGGCGTGGCGTGGTTAAGAGGTTTGGGAGTAGGGTACATGTTGTCCCTATGCACTCAGATTGGTTTTCACCTGCCACGGTGCATCGACTTGAGAGACAAGTTGTTCCACATTTTTTCTCTGGAAAATTTCCTGACCGCACTCCCGAGAAGTATATGGAAATTCGAAATTTTGTTGTTGCGAAATACATGGAGAATCCTGAGAAAAGGGTCACAGTTTCAGACTTCCAAGGATTGATTGATGGTGTCAGTAATGAAGATTTAACTCGAATTGTTCGATTTCTTGATCATTGGGGTATTATTAATTATTGTGCTCCTGCACCTAGCTGTGAACCATGGAATAGTAGTTCATACTTGAGAGAAGATATGAACGGTGAGATTCATGTGCCATCAGCTGCTTTGAAGCCTATCGATAGCTTGATCAAATTTGACAAACCAAAATGTAGGCTCAAGGCAAATGAGGTCTATTCGATTCTTCCGTGCCATGATGATCATGATGATTTGTGTGATTTGGATAACAAAATTCGTGAGCGTCTAGCTGAAAATTATTGTAGCTCTTGTTCTCGGCCTGTTCCCATTGCATACTACCAATCACAGAAGGAGGTTGATGTTTTACTTTGCTCCGACTGCTTCTATGAAGGCAAATATGTTGCTGGTCATGCAAGTATTGATTTTCTGAGGGTAGACATGACGAAAGATTATGATGAACTAGATAGTGAAAATTGGACTGATCAAGAAACTCTATTGCTTTTAGAGGCAATAGAATTGTATAATGATAACTGGAACGAAATTACAGAACATGTTGGGTCCAAGTCTAAAGCTCAATGCATTATACATTTTCTTCGCCTATCAGTGGAGGATGGCCTTCTAGAAAACGTTGACGTGCCTGGTGTTTCTCTCTCGTCCAATTCTTCACATGGAGAAGATAATCAGAAGTCGCATTCAAATATGAACGGAAATGTAGCAGCTGACTCATTTATGGGAATAACTAATAGAGGTAGAAAAAGGATGTCCTGGTTGATGATTTGGAATAATGAGTATAAGACAATTAAGCAGGGCAGAGCAGTTGCTTTTCTCGCATCTGCTGTTGGACCAAGAGTTGCTGCATCATGTGCTCATGCATCCTTAGCTGCTTTATCTGAGGACAGTGTAGCTTCTTCCGGGAGCATCTTTCAAAGGGAGGGTTCTGTAAACGCCAATAGGACGAACGTCGACATCGCACATGGCAGAGACAGTGGCTCTTATGGACAACTTCCAAATTCAGTTGAGCAAAAAGATGAGAACAAGGCAGAGCCTGAGGTAACACAATTATCTTCTGAACGAGTTAAAGTTGCAGCAAAAGCAGGCCTTGCTGCCGCTGCAACGAAGGCGAAATTGTTTGCTGATCATGAAGAACGAGAAATCCAACGTTTGTCTGCCAATATTATAAATCACCAGTTAAGAAGACTGGAGCTGAAGCTGAAGCAGTTTGCAGAAGTAGAAACCTTCTTAATGAAGGAATGCGAACAAGTTGAGAGGACAAGGCAGCGGCTTGTTGCAGAGCGAGCAAGAATGTTAGGTATCCAATTCGGAACTGCTGCTGGAGTTTCGTCACCTGCAAGTTTACCGGGCATTATCCCTTCCATGGTCAACAACAATAACACAAACAGTAGGCAGAATATGATCTCACCTCCAGCTTCACAGCCGAGCGTTTCGGGGTATAACAACAACCAACCACTTCACCCCCACATGTCGTACATGCCCCGACAGTCGATGTTCGGTTTAGGGCAAAGGCTACCCTTATCAATTCAGCAGCAGCAGCAGCAGCAGCAGCAGCCCGCCACGACTTCTTCTAATGCCATGTTCAATGGTCCAACCAATGCACAGCCTTCTCTCAGTCACCCAATGATGAGGCCAGTTACTGGATCCAGCTCTGGATTAGGGTGA 2463 45.31 MPASPSFPSGSRGKWRKKKRDSQIGRRNNFPNSNNNGSNKHEEEDEDEDLAAAENEEMERDNNDDSEDPQINLQSAPNSSLQEPELLSDDKVRVSEFPQVVKRVVTRPHSSVLAVVAMERANQFGESKGLPGNSLILENVSYGQLQALSAMPADSPALLDQERVEAGNAAYVITPPPIMEGRGVVKRFGSRVHVVPMHSDWFSPATVHRLERQVVPHFFSGKFPDRTPEKYMEIRNFVVAKYMENPEKRVTVSDFQGLIDGVSNEDLTRIVRFLDHWGIINYCAPAPSCEPWNSSSYLREDMNGEIHVPSAALKPIDSLIKFDKPKCRLKANEVYSILPCHDDHDDLCDLDNKIRERLAENYCSSCSRPVPIAYYQSQKEVDVLLCSDCFYEGKYVAGHASIDFLRVDMTKDYDELDSENWTDQETLLLLEAIELYNDNWNEITEHVGSKSKAQCIIHFLRLSVEDGLLENVDVPGVSLSSNSSHGEDNQKSHSNMNGNVAADSFMGITNRGRKRMSWLMIWNNEYKTIKQGRAVAFLASAVGPRVAASCAHASLAALSEDSVASSGSIFQREGSVNANRTNVDIAHGRDSGSYGQLPNSVEQKDENKAEPEVTQLSSERVKVAAKAGLAAAATKAKLFADHEEREIQRLSANIINHQLRRLELKLKQFAEVETFLMKECEQVERTRQRLVAERARMLGIQFGTAAGVSSPASLPGIIPSMVNNNNTNSRQNMISPPASQPSVSGYNNNQPLHPHMSYMPRQSMFGLGQRLPLSIQQQQQQQQQPATTSSNAMFNGPTNAQPSLSHPMMRPVTGSSSGLG 820
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3776713 3784200 - Cp4.1LG06g06080.1 Cpe06g00612 471392

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00612 820 SUPERFAMILY Homeodomain-like 418 467 IPR009057 -
Cpe06g00612 820 Coils Coil 640 660 - -
Cpe06g00612 820 Coils Coil 41 61 - -
Cpe06g00612 820 MobiDBLite consensus disorder prediction 42 64 - -
Cpe06g00612 820 MobiDBLite consensus disorder prediction 724 753 - -
Cpe06g00612 820 SMART sant 417 465 IPR001005 -
Cpe06g00612 820 CDD SANT 420 462 IPR001005 -
Cpe06g00612 820 ProSiteProfiles Myb-like domain profile. 413 463 IPR001005 -
Cpe06g00612 820 ProSiteProfiles SWIRM domain profile. 193 291 IPR007526 GO:0005515
Cpe06g00612 820 Pfam Myb-like DNA-binding domain 419 461 IPR001005 -
Cpe06g00612 820 MobiDBLite consensus disorder prediction 1 87 - -
Cpe06g00612 820 ProSiteProfiles SANT domain profile. 416 467 IPR017884 -
Cpe06g00612 820 Gene3D - 417 467 - -
Cpe06g00612 820 SUPERFAMILY Homeodomain-like 192 290 IPR009057 -
Cpe06g00612 820 PANTHER SWI/SNF COMPLEX SUBUNIT SWI3C 74 819 - -
Cpe06g00612 820 MobiDBLite consensus disorder prediction 68 85 - -
Cpe06g00612 820 Gene3D - 199 286 IPR036388 -
Cpe06g00612 820 PANTHER SWI/SNF COMPLEX-RELATED 74 819 - -
Cpe06g00612 820 MobiDBLite consensus disorder prediction 774 820 - -
Cpe06g00612 820 Pfam SWIRM domain 196 282 IPR007526 GO:0005515
Cpe06g00612 820 MobiDBLite consensus disorder prediction 585 610 - -
Cpe06g00612 820 MobiDBLite consensus disorder prediction 479 500 - -
Cpe06g00612 820 Pfam SWIRM-associated region 1 627 697 IPR032451 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00612 K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C - csv:101220514 1321.61
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe02g00561 Cpe06g00612 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00127 Cpe-Chr4:1136951 Cpe06g00612 Cpe-Chr6:3776713 6.10E-07 dispersed
Cpe06g00612 Cpe-Chr6:3776713 Cpe15g00532 Cpe-Chr15:6214774 3.14E-12 dispersed
Cpe18g00918 Cpe-Chr18:8162127 Cpe06g00612 Cpe-Chr6:3776713 3.78E-36 transposed
Cpe02g00561 Cpe-Chr2:3355557 Cpe06g00612 Cpe-Chr6:3776713 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g235 . Blo12g01124 . Bda03g00015 . Bpe04g00010 Bma04g00014 . . . Cma01g01377 Cma09g00777 . . . Cpe06g00612 . . . . . . . . . . . . . . . . . . Cone20ag0433 Lsi04g02409 Csa04g01782 . . . . . . . . . . Sed06g0997 Cmo01g01428 Cmo09g00769 . . . Car09g00686 . Cpe02g00561 Bhi09g02703 Tan01g4053 Cmetu07g1927 . Hepe01g1595 Mch11g0847 . Cla11g01548 Cam11g1612 Cec11g1641 Cco11g1642 Clacu11g1770 Cmu11g1587 Cre11g2004 . . Chy07g00621 Cme07g00826
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005902 1 1 1 1 1 0 2 1 0 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 3 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00612 Cpe_Chr06 FPKM 5.027454 5.254218 6.063731 4.646704 10.337446 10.344666 10.926899 4.543439 6.580155 6.274025