Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00618 ATGTCGGAAGCGAAGGTGTTCGATGCGACGGCGGCGACGGAGTTGGTGAAGGAGCTGAGAGGCACTTTTGCCTCCGGCAGGACGCGGAGCTATGAGTGGAGAGTATCGCAGCTTGAGAGCATCTTGAAGCTTAGCGCTGACCATGAGGAAGAGATCAGCGATGCGATTCATTCAGACCTCTCCAAGCCTGCGTTGGAATCCATCATTCATGAGATTCATGATATCCGTGTTCATAAATGTGCTGTTCTGTTATCACTGTTTCTTGTGGTTGAATTAACGAACGGCACCTGTTTGTTGAAATGTCCAATCCTTCAAATTCGTTTTGCGCGGGACCGTGTGATCATTGAAATAGGCATGGTAAAGAATTCGTGTAAATTGGCTCTTAAAGAACTTAGGCGTTGGATGACACCAGAGAAGGTTCAAACTACAATTACCACTTTTCCTTCGTCTGCTGAAATTGTACCAGAACCTTTGGGTGTTGTGCTGAACATTTCTCCTTGGAATTATCCATTCTCTGGTAATGCTGTGGTTCTAAAGCCATCAGAAATTTCCCCAACAACATCATCTTTAATAGCTAAACTTTTAGGGAAGTATTTGGATACTTCTGCCGTAAAGGTTGTCGAGGGTGCTGTTCCCGAAACTAATGCTTTGCTTGAGCAAAAGTGGGACAAGATATTTTACACAGGCAATGGGAGAGTGGGGCGTATAGTGATGGCAGCTGCTGCCAAGCACCTTACGCCAGTTGTTTTAGAGCTTGGAGGAAAATCTCCAGTAGTAGTGGACTCAAAAATCAATTTACAAGTTGCGTGCCGGCGGATTATTGCTGGTAAGTGGGGTGGTAACAATGGACAAGCATGCGTTTCTCCTGATTATATCATAACTACGAAAGAAGTTGCTCCAAAATTGGTGGAGTCCCTAAAACAAGAACTGGAGAGATTTTATGGAAAGAATCCATTGGAATCTAAAGATTTATCTCGCATTGTGAATGCTAACCACTTTGATCGCTTGACAAAGCTCTTGGATGATGATAAAGTTTCTGGCAAGATTGTGCTTGGAGGTGAAAAGGACAAATCCAAATTGCAGATTGCTCCCACCCTCTTACTGGATGTCCCTAGAGACTCTCTGATTATGACGGAGGAGATATTTGGTCCCTTACTTCCCATTATCACGGTAGACAAACTGGAGGACTGCTTTGACATAGTGAATTCGGGCACAAAGCCACTGGCAGCATATTTATTTACCAGCAATAAAAAGCTCAAGGAACAGTTCGTGGCTTGCATCTCTGCAGGGGCTGTGGTTATCAATGACACCACATTACATCTGGCAGTTAGCACACTACCATTTGGAGGAGTTGGGGAGAGTGGAATGGGAGCTTACCATGGGAAGTTCTCATTTGATGCATTTAGCCATAAGAAGGCTGTTCTATATCGAAGTTTTGCAGGCGATGTGGCGATGAGATACCCGCCTTACACACCGGGAAAGCTAAGGTTTCTGAAAGCTCTTCTTGGAGGTGGCATATTGGGACTCATTCGTGCTATTCTTGGTTGGTCGTAA 1554 44.72 MSEAKVFDATAATELVKELRGTFASGRTRSYEWRVSQLESILKLSADHEEEISDAIHSDLSKPALESIIHEIHDIRVHKCAVLLSLFLVVELTNGTCLLKCPILQIRFARDRVIIEIGMVKNSCKLALKELRRWMTPEKVQTTITTFPSSAEIVPEPLGVVLNISPWNYPFSGNAVVLKPSEISPTTSSLIAKLLGKYLDTSAVKVVEGAVPETNALLEQKWDKIFYTGNGRVGRIVMAAAAKHLTPVVLELGGKSPVVVDSKINLQVACRRIIAGKWGGNNGQACVSPDYIITTKEVAPKLVESLKQELERFYGKNPLESKDLSRIVNANHFDRLTKLLDDDKVSGKIVLGGEKDKSKLQIAPTLLLDVPRDSLIMTEEIFGPLLPIITVDKLEDCFDIVNSGTKPLAAYLFTSNKKLKEQFVACISAGAVVINDTTLHLAVSTLPFGGVGESGMGAYHGKFSFDAFSHKKAVLYRSFAGDVAMRYPPYTPGKLRFLKALLGGGILGLIRAILGWS 517
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3815540 3823619 - Cp4.1LG06g06250.1 Cpe06g00618 471398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00618 517 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 21 75 IPR016162 GO:0016491
Cpe06g00618 517 PIRSF ALDH 1 507 IPR012394 GO:0006081
Cpe06g00618 517 SUPERFAMILY ALDH-like 7 477 IPR016161 GO:0016491
Cpe06g00618 517 Pfam Aldehyde dehydrogenase family 116 474 IPR015590 GO:0016491
Cpe06g00618 517 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 254 454 IPR016163 GO:0016620
Cpe06g00618 517 PANTHER ALDEHYDE DEHYDROGENASE 4 84 IPR012394 GO:0006081
Cpe06g00618 517 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 250 257 IPR029510 GO:0016491
Cpe06g00618 517 PANTHER ALDEHYDE DEHYDROGENASE 111 517 IPR012394 GO:0006081
Cpe06g00618 517 PANTHER ALDEHYDE DEHYDROGENASE 4 84 - -
Cpe06g00618 517 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 112 472 IPR016162 GO:0016491
Cpe06g00618 517 PANTHER ALDEHYDE DEHYDROGENASE 111 517 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00618 Cpe-Chr6:3815540 Cpe14g00552 Cpe-Chr14:3505085 2.78E-146 dispersed
Cpe06g00618 Cpe-Chr6:3815540 Cpe06g00619 Cpe-Chr6:3823714 0 tandem
Cpe02g00556 Cpe-Chr2:3321380 Cpe06g00618 Cpe-Chr6:3815540 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00618 K00128 - csv:101219569 785.408