Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00618 ATGTCGGAAGCGAAGGTGTTCGATGCGACGGCGGCGACGGAGTTGGTGAAGGAGCTGAGAGGCACTTTTGCCTCCGGCAGGACGCGGAGCTATGAGTGGAGAGTATCGCAGCTTGAGAGCATCTTGAAGCTTAGCGCTGACCATGAGGAAGAGATCAGCGATGCGATTCATTCAGACCTCTCCAAGCCTGCGTTGGAATCCATCATTCATGAGATTCATGATATCCGTGTTCATAAATGTGCTGTTCTGTTATCACTGTTTCTTGTGGTTGAATTAACGAACGGCACCTGTTTGTTGAAATGTCCAATCCTTCAAATTCGTTTTGCGCGGGACCGTGTGATCATTGAAATAGGCATGGTAAAGAATTCGTGTAAATTGGCTCTTAAAGAACTTAGGCGTTGGATGACACCAGAGAAGGTTCAAACTACAATTACCACTTTTCCTTCGTCTGCTGAAATTGTACCAGAACCTTTGGGTGTTGTGCTGAACATTTCTCCTTGGAATTATCCATTCTCTGGTAATGCTGTGGTTCTAAAGCCATCAGAAATTTCCCCAACAACATCATCTTTAATAGCTAAACTTTTAGGGAAGTATTTGGATACTTCTGCCGTAAAGGTTGTCGAGGGTGCTGTTCCCGAAACTAATGCTTTGCTTGAGCAAAAGTGGGACAAGATATTTTACACAGGCAATGGGAGAGTGGGGCGTATAGTGATGGCAGCTGCTGCCAAGCACCTTACGCCAGTTGTTTTAGAGCTTGGAGGAAAATCTCCAGTAGTAGTGGACTCAAAAATCAATTTACAAGTTGCGTGCCGGCGGATTATTGCTGGTAAGTGGGGTGGTAACAATGGACAAGCATGCGTTTCTCCTGATTATATCATAACTACGAAAGAAGTTGCTCCAAAATTGGTGGAGTCCCTAAAACAAGAACTGGAGAGATTTTATGGAAAGAATCCATTGGAATCTAAAGATTTATCTCGCATTGTGAATGCTAACCACTTTGATCGCTTGACAAAGCTCTTGGATGATGATAAAGTTTCTGGCAAGATTGTGCTTGGAGGTGAAAAGGACAAATCCAAATTGCAGATTGCTCCCACCCTCTTACTGGATGTCCCTAGAGACTCTCTGATTATGACGGAGGAGATATTTGGTCCCTTACTTCCCATTATCACGGTAGACAAACTGGAGGACTGCTTTGACATAGTGAATTCGGGCACAAAGCCACTGGCAGCATATTTATTTACCAGCAATAAAAAGCTCAAGGAACAGTTCGTGGCTTGCATCTCTGCAGGGGCTGTGGTTATCAATGACACCACATTACATCTGGCAGTTAGCACACTACCATTTGGAGGAGTTGGGGAGAGTGGAATGGGAGCTTACCATGGGAAGTTCTCATTTGATGCATTTAGCCATAAGAAGGCTGTTCTATATCGAAGTTTTGCAGGCGATGTGGCGATGAGATACCCGCCTTACACACCGGGAAAGCTAAGGTTTCTGAAAGCTCTTCTTGGAGGTGGCATATTGGGACTCATTCGTGCTATTCTTGGTTGGTCGTAA 1554 44.72 MSEAKVFDATAATELVKELRGTFASGRTRSYEWRVSQLESILKLSADHEEEISDAIHSDLSKPALESIIHEIHDIRVHKCAVLLSLFLVVELTNGTCLLKCPILQIRFARDRVIIEIGMVKNSCKLALKELRRWMTPEKVQTTITTFPSSAEIVPEPLGVVLNISPWNYPFSGNAVVLKPSEISPTTSSLIAKLLGKYLDTSAVKVVEGAVPETNALLEQKWDKIFYTGNGRVGRIVMAAAAKHLTPVVLELGGKSPVVVDSKINLQVACRRIIAGKWGGNNGQACVSPDYIITTKEVAPKLVESLKQELERFYGKNPLESKDLSRIVNANHFDRLTKLLDDDKVSGKIVLGGEKDKSKLQIAPTLLLDVPRDSLIMTEEIFGPLLPIITVDKLEDCFDIVNSGTKPLAAYLFTSNKKLKEQFVACISAGAVVINDTTLHLAVSTLPFGGVGESGMGAYHGKFSFDAFSHKKAVLYRSFAGDVAMRYPPYTPGKLRFLKALLGGGILGLIRAILGWS 517
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3815540 3823619 - Cp4.1LG06g06250.1 Cpe06g00618 471398

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00618 517 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 21 75 IPR016162 GO:0016491
Cpe06g00618 517 PIRSF ALDH 1 507 IPR012394 GO:0006081
Cpe06g00618 517 SUPERFAMILY ALDH-like 7 477 IPR016161 GO:0016491
Cpe06g00618 517 Pfam Aldehyde dehydrogenase family 116 474 IPR015590 GO:0016491
Cpe06g00618 517 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 254 454 IPR016163 GO:0016620
Cpe06g00618 517 PANTHER ALDEHYDE DEHYDROGENASE 4 84 IPR012394 GO:0006081
Cpe06g00618 517 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 250 257 IPR029510 GO:0016491
Cpe06g00618 517 PANTHER ALDEHYDE DEHYDROGENASE 111 517 IPR012394 GO:0006081
Cpe06g00618 517 PANTHER ALDEHYDE DEHYDROGENASE 4 84 - -
Cpe06g00618 517 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 112 472 IPR016162 GO:0016491
Cpe06g00618 517 PANTHER ALDEHYDE DEHYDROGENASE 111 517 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00618 K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] - csv:101219569 785.408
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00618 Cpe-Chr6:3815540 Cpe14g00552 Cpe-Chr14:3505085 2.78E-146 dispersed
Cpe06g00618 Cpe-Chr6:3815540 Cpe06g00619 Cpe-Chr6:3823714 0 tandem
Cpe02g00556 Cpe-Chr2:3321380 Cpe06g00618 Cpe-Chr6:3815540 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe04g01139 . 6 495 Aldehyde Dehydrogenase Gene Family AT3G24503 69.0 3.0e-205 711.8
Cpe18g00444 . 1 472 Aldehyde Dehydrogenase Gene Family AT3G24503 67.0 3.1e-194 675.2
Cpe11g00003 . 34 535 Aldehyde Dehydrogenase Gene Family AT3G24503 54.3 3.8e-160 562.0
Cpe07g00001 . 34 535 Aldehyde Dehydrogenase Gene Family AT3G24503 53.9 4.2e-159 558.5
Cpe04g01548 . 33 494 Aldehyde Dehydrogenase Gene Family AT3G24503 54.0 3.4e-145 512.3
Cpe07g00001 . 1 535 Aldehyde Dehydrogenase Gene Family AT3G48000 77.0 7.2e-250 860.1
Cpe11g00003 . 1 535 Aldehyde Dehydrogenase Gene Family AT3G48000 75.5 1.7e-246 849.0
Cpe04g01548 . 9 496 Aldehyde Dehydrogenase Gene Family AT3G48000 80.2 6.6e-243 837.0
Cpe04g01139 . 17 495 Aldehyde Dehydrogenase Gene Family AT3G48000 53.2 1.0e-155 547.4
Cpe18g00444 . 18 472 Aldehyde Dehydrogenase Gene Family AT3G48000 51.3 4.1e-144 508.8
Cpe07g00001 . 1 379 Aldehyde Dehydrogenase Gene Family AT1G23800 76.8 1.6e-169 592.8
Cpe11g00003 . 1 379 Aldehyde Dehydrogenase Gene Family AT1G23800 76.4 1.4e-168 589.7
Cpe04g01548 . 7 342 Aldehyde Dehydrogenase Gene Family AT1G23800 74.1 7.1e-157 550.8
Cpe04g01139 . 17 345 Aldehyde Dehydrogenase Gene Family AT1G23800 53.8 4.2e-101 365.5
Cpe02g00556 CCT,ECH 22 529 Aldehyde Dehydrogenase Gene Family AT4G34240 60.2 3.8e-174 608.6
Cpe06g00619 CCT,ECH 7 465 Aldehyde Dehydrogenase Gene Family AT4G34240 59.7 6.0e-164 574.7
Cpe06g00618 . 3 517 Aldehyde Dehydrogenase Gene Family AT4G34240 56.0 1.9e-162 569.7
Cpe02g00556 CCT,ECH 117 527 Aldehyde Dehydrogenase Gene Family AT1G44170 71.0 1.4e-176 616.3
Cpe06g00618 . 108 515 Aldehyde Dehydrogenase Gene Family AT1G44170 69.3 3.5e-167 585.1
Cpe06g00619 CCT,ECH 72 465 Aldehyde Dehydrogenase Gene Family AT1G44170 66.9 4.3e-157 551.6
Cpe05g00500 . 59 475 Aldehyde Dehydrogenase Gene Family AT1G44170 51.6 2.0e-117 419.9
Cpe14g00552 . 5 477 Aldehyde Dehydrogenase Gene Family AT4G36250 61.7 5.3e-183 637.9
Cpe05g00500 . 5 477 Aldehyde Dehydrogenase Gene Family AT4G36250 56.2 1.7e-157 553.1
Cpe16g00704 CCT 39 638 Aldehyde Dehydrogenase Gene Family AT1G79440 64.1 3.9e-216 748.0
Cpe05g01029 CCT 39 469 Aldehyde Dehydrogenase Gene Family AT1G79440 60.6 5.4e-165 578.2
Cpe04g00361 . 12 591 Aldehyde Dehydrogenase Gene Family AT2G14170 65.2 2.4e-209 725.7
Cpe10g00532 . 56 459 Aldehyde Dehydrogenase Gene Family AT2G14170 69.1 9.7e-171 597.4
Cpe18g00825 . 1 501 Aldehyde Dehydrogenase Gene Family AT1G74920 80.8 1.8e-250 862.1
Cpe18g00825 . 1 503 Aldehyde Dehydrogenase Gene Family AT3G48170 81.1 1.3e-253 872.5
Cpe07g00985 . 1 390 Aldehyde Dehydrogenase Gene Family AT2G24270 66.9 1.2e-177 620.2
Cpe07g01153 . 2 371 Aldehyde Dehydrogenase Gene Family AT2G24270 68.1 1.5e-177 619.8
Cpe20g00200 . 32 554 Aldehyde Dehydrogenase Gene Family AT5G62530 80.7 5.9e-263 903.7
Cpe12g00317 CST 1 600 Aldehyde Dehydrogenase Gene Family AT3G66658 72.1 9.8e-264 906.4
Cpe17g00066 CST 1 517 Aldehyde Dehydrogenase Gene Family AT3G66658 65.0 9.5e-227 783.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002493 2 3 2 2 2 0 3 2 0 2 1 2 3 2 2 3 2 3 3 2 1 1 1 1 1 2 1 3 2 2 56
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00618 Cpe_Chr06 FPKM 19.8559 22.536577 24.215752 24.243114 34.432617 34.903255 33.852398 31.767145 32.621685 30.320461