Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00629 ATGATGAAACAGGTGCTCTATAATTTCTCTTTTACAGGCATGGGTGCTGCTTATGGGACTGCAAAGAGTGGAGTTGGAGTGGCCTCCATGGGAGTTATGAGGCCAGAGCTTGTCATGAAATCTATAGTTCCTGTTGTTATGGCTGGAGTGTTGGGTATTTATGGATTGATCATTGCTGTTATTATTAGTACCGGAATAAACCCGAAAGCGAAATCGTACTATTTGTTTGATGGTTATGCTCATCTGTCTTCTGGACTTGCTTGTGGACTTGCTGGTCTCTCTGCTGGAATGGCAATTGGGATTGTTGGTGATGCTGGCATGGGTGCTGCTTATGGGACTGCAAAGAGTGGAGTTGGAGTGGCCTCCATGGGAGTTATGAGGCCAGAGCTTGTCATGAAATCTATAGTTCCTGTTGTTATGGCTGGAGTGTTGGGTATTTATGGATTGATCATTGCTGTTATTATTAGTACCGGAATAAACCCGAAAGCGAAATCGTACTATTTGTTTGATGGTTATGCTCATCTGTCTTCTGGACTTGCTTGTGGACTTGCTGGTCTCTCTGCTGGAATGGCAATTGGGATTGTTGGTGATGCTGGTGTTCGGGCCAATGCACAACAACCTAAGCTCTTTGTTGGAATGATTCTCATCCTCATCTTCGCCGAAGCTCTCGCCCTCTACGGTCTCATTGTTGGTATCATTCTTTCCTCTCGAGCAGGCCAATCCCGTGCAGATTAA 735 45.31 MMKQVLYNFSFTGMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 244
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3901365 3903857 + Cp4.1LG06g06320.1 Cpe06g00629 471409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00629 244 CDD ATP-synt_Vo_c_ATP6C_rpt1 11 66 - -
Cpe06g00629 244 Gene3D - 107 241 IPR035921 -
Cpe06g00629 244 Gene3D - 4 106 IPR035921 -
Cpe06g00629 244 Pfam ATP synthase subunit C 103 155 IPR002379 GO:0015078|GO:0033177|GO:1902600
Cpe06g00629 244 Pfam ATP synthase subunit C 11 62 IPR002379 GO:0015078|GO:0033177|GO:1902600
Cpe06g00629 244 Pfam ATP synthase subunit C 176 234 IPR002379 GO:0015078|GO:0033177|GO:1902600
Cpe06g00629 244 SUPERFAMILY F1F0 ATP synthase subunit C 73 156 IPR035921 -
Cpe06g00629 244 CDD ATP-synt_Vo_c_ATP6C_rpt1 107 159 - -
Cpe06g00629 244 PRINTS Vacuolar ATP synthase 16kDa subunit signature 186 212 IPR000245 GO:0033179|GO:0046961|GO:1902600
Cpe06g00629 244 PRINTS Vacuolar ATP synthase 16kDa subunit signature 213 236 IPR000245 GO:0033179|GO:0046961|GO:1902600
Cpe06g00629 244 PRINTS Vacuolar ATP synthase 16kDa subunit signature 109 133 IPR000245 GO:0033179|GO:0046961|GO:1902600
Cpe06g00629 244 PRINTS Vacuolar ATP synthase 16kDa subunit signature 135 159 IPR000245 GO:0033179|GO:0046961|GO:1902600
Cpe06g00629 244 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 9 108 - -
Cpe06g00629 244 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 107 244 - -
Cpe06g00629 244 TIGRFAM V_ATP_synt_C: V-type ATPase, C subunit 10 106 IPR011555 GO:0033179|GO:0046961|GO:1902600
Cpe06g00629 244 TIGRFAM V_ATP_synt_C: V-type ATPase, C subunit 106 200 IPR011555 GO:0033179|GO:0046961|GO:1902600
Cpe06g00629 244 SUPERFAMILY F1F0 ATP synthase subunit C 166 235 IPR035921 -
Cpe06g00629 244 PANTHER V-TYPE PROTON ATPASE SUBUNIT C2 9 108 - -
Cpe06g00629 244 PANTHER V-TYPE PROTON ATPASE SUBUNIT C2 107 244 - -
Cpe06g00629 244 CDD ATP-synt_Vo_c_ATP6C_rpt2 168 235 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00629 Cpe-Chr6:3901365 Cpe07g00379 Cpe-Chr7:2450787 3.21E-62 dispersed
Cpe02g00544 Cpe-Chr2:3249150 Cpe06g00629 Cpe-Chr6:3901365 2.27E-62 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00629 K02155 - thj:104806903 242.276