Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00639 ATGGCGGCTGTCGGAATTGCTTCTGCAAACCAAGGAAGCCATTCCTTTCTCCCGTCCTCTCCCATCGTTTTCCGATATATAAAATCTTCCCATATTCCGATTCCCTTTCCCAAATCCTTTCATAATATAACAAAACTACCCATGTCTTTCACCCCACCTCCCCACACAACCAACGACCGCCGCCATGCCAGAACCTTCCACCTCTACTGGTGCCACCAATGCCATCGGACCGTCACCCTCGCCTCCGCACAACCGTCGGACCTCACATGCCCACGCTGTTTCGGCCACTTCGTTGAAGAGGTCCACCTCCCCCTCCCCGAACTCGATCCTTCACCGGAGACTCGTTTACTCGAAGCTCTCTCGCTAATGCTCGACCCACCGGTTTGTCTCTTCAATTACCGACACCCAGTCCCGGACCACCGCCGTCCACCGCTAAATAGGTTCGACGATTTCGACCGGAGATCATTTAGCGATCCGGAAGGAGACGAATGGCTGCACTGGCGAACACGACGGCGCAGTCGAAGCCTGGATGAGAGGGACAATTCCGGCCGACAACCCCCAAATCCGAACCAGTCTCGAACTGTCATAGTTCTCGGTCCCCCCGACCAGTTTCAGCCGATTCAGCCCATAATACCTCGGAGAGCCAATCCAAGAGACTACTTTACCGGGCCGAGACTGGACGAATTAATTGAAGACCTGACGCAGAACGACCGGCCAGGGCCGGCGCCGGCAGGGGAGGAGGCGATCGAGAGGATACCGACGGTGAAGATAGCGGCGGAGCATCTGAAGAACGACTCGCAGTGTCCAGTTTGTAAGGAGGAGTTTGAGGTGGGGGGAGAAGCAAGGGAATTGAGCTGTAAGCATTTATACCATTCGGAGTGCATAGTTCCGTGGCTTCGGCTTCACAACTCTTGCCCAGTTTGTAGGCAAGAGATACCGCCATTGCCGCCGGAGAATGGAGCGGCGGGAAATTCTGAAAATGGAGTACGGATCGGGAGAGCATGTACCAGGTGGTGGAATCGGTTGGTGTCTTGGCTATTTCGGAATAGGTATAGGCAGATTAGTCCTTCAAGTCCACCCAACCGCTTCAATGCTTCTCCTTATCCAGATGATGTCTAA 1119 54.33 MAAVGIASANQGSHSFLPSSPIVFRYIKSSHIPIPFPKSFHNITKLPMSFTPPPHTTNDRRHARTFHLYWCHQCHRTVTLASAQPSDLTCPRCFGHFVEEVHLPLPELDPSPETRLLEALSLMLDPPVCLFNYRHPVPDHRRPPLNRFDDFDRRSFSDPEGDEWLHWRTRRRSRSLDERDNSGRQPPNPNQSRTVIVLGPPDQFQPIQPIIPRRANPRDYFTGPRLDELIEDLTQNDRPGPAPAGEEAIERIPTVKIAAEHLKNDSQCPVCKEEFEVGGEARELSCKHLYHSECIVPWLRLHNSCPVCRQEIPPLPPENGAAGNSENGVRIGRACTRWWNRLVSWLFRNRYRQISPSSPPNRFNASPYPDDV 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3956388 3957506 - Cp4.1LG06g06380.1 Cpe06g00639 471419

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00639 372 ProSiteProfiles Zinc finger RING-type profile. 268 309 IPR001841 -
Cpe06g00639 372 Pfam zinc-ribbon 69 100 IPR039525 GO:0061630
Cpe06g00639 372 MobiDBLite consensus disorder prediction 174 196 - -
Cpe06g00639 372 Pfam Ring finger domain 267 309 IPR001841 -
Cpe06g00639 372 MobiDBLite consensus disorder prediction 182 196 - -
Cpe06g00639 372 CDD RING-H2_RNF126_like 267 309 - -
Cpe06g00639 372 SMART ring_2 268 308 IPR001841 -
Cpe06g00639 372 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 231 315 IPR013083 -
Cpe06g00639 372 SUPERFAMILY RING/U-box 248 315 - -
Cpe06g00639 372 PANTHER - 59 323 - -
Cpe06g00639 372 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 59 323 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00639 K11982 RNF115_126; E3 ubiquitin-protein ligase RNF115/126 [EC:2.3.2.27] - csv:101215288 478.404
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00465 Cpe-Chr1:2678993 Cpe06g00639 Cpe-Chr6:3956388 2.30E-27 dispersed
Cpe06g00639 Cpe-Chr6:3956388 Cpe19g00238 Cpe-Chr19:1960275 2.88E-46 dispersed
Cpe02g00552 Cpe-Chr2:3301011 Cpe06g00639 Cpe-Chr6:3956388 1.85E-147 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g291 . Blo12g00673 . Bda03g00531 . Bpe04g00485 . . . . . Cma09g00804 . . . Cpe06g00639 . . . . . . . . . . . . . . . Cone4ag1390 . . . Lsi04g02380 Csa04g01892 . . . . . . . . . . . . Cmo09g00797 . . . Car09g00720 . . Bhi09g02658 . . . Hepe01g2273 Mch11g0820 . Cla11g01527 . . . . . . . . Chy07g00659 Cme07g00866
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007071 1 5 1 0 1 0 2 1 0 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 0 1 1 1 2 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00639 Cpe_Chr06 FPKM 9.799646 9.165011 11.482813 13.430652 14.666506 15.909645 14.882373 16.415598 15.628479 16.828516