Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00640 ATGGATGGTTCGAAAAGTCAGTTGAAGCTTACAAGGACTCAGTCGTCGTTACTTCGTTCGTCGCCCACTTTCCGAACGTCTGTTCATAGTTTATCGTCCGTCACCGAGGAGGATCTCATCGCCATCCATCAAGAGGATGATGATGAAGAGAAGCAGAGGCCTAAGAAGCCTCGTAGGTCCAGTTCGTCATCGAGAGCCGGATTGAACCGATTTGCGAACCGTGTTCTTGCTATGGCTTTGCTTGTTTGCTTTACCTTCTTCTCTTTGCTCATTGCGTTTTTCTTTCTGAAGAAGGATGGGCCACTCCCGTCGGCTTGCTTGTTGGCTCTGATTTTTGTTGCTATTACGCTTGTGTTTGTAAGCAAGAATAAGGGGTTAATTTTACATGTTCTTTCGTTTATCAAGCATTCTTGGCAAGAAAATGCCAAGAGATTCTGTTTCTCCAGGACGGATTCGACTCCGATTCAGTGGTACATTGGTGATTCGAACGGAGCCGAAGACGACAACCAAAATCAGAGAAAAATTAGCAGAGAGGGGGTAGAGTTCTATAGCAATGGTGATTTCTACGAGGGAGAGTTTCACAACGGGACTTGTAATGGAAGTGGGGTTTATAACTATTTCCTAAGTGGGAGATACGAGGGAGATTGGGTCGATGGGAGGTACGATGGCCATGGGGTTGAGACCTGGGCGAAGGGGAGTCGTTACAGGGGTCAGTATCGACAGGGTCTTAGACATGGATTTGGAGTCTATAAGTTCTTCACGGGGGATTACTATGCCGGTGAGTGGTGTAATGGCCAAAGCCATGGCGTTGGGCTTCAGACTTGTGCTGATGGTAGCTGCTATGTTGGCCAGTTCCACCGCGGCGTTAAGCATGGTCTTGGATCTTACTATTTCAGAAATGGAGATAGATACGCTGGAGAGTACTTTGGGGACAAAGTTCATGGTTTCGGAATCTACCATTTCGCAAATGGCCATTGTTACGAAGGATCATGGCATGAAGGCCAAAGGCAAGGATATGGCACGTATACCTTCCGAAACAGCGAAGCCAAATGCGGTGGATGGGATTCTGGTAGCCTCAAGCAGCCTCTCTCGCCGCTGAGCGAGGCCGTTGTTGAAGCTGTTCAGGCATCTAGAAAGGCAGCAAGGAATGCTGTTAACCTTCCCCGGTTGGATGAACAAGTGAATAAAGCTGTGGTTGCTGCTAATAGATCGGCCACCGCGGCCCGAGTCGCAGCCATCAAAGCCGTTCAAAATCGAATGGACGGTAAGTTCTGCGATTCGGATGTGTAA 1290 48.29 MDGSKSQLKLTRTQSSLLRSSPTFRTSVHSLSSVTEEDLIAIHQEDDDEEKQRPKKPRRSSSSSRAGLNRFANRVLAMALLVCFTFFSLLIAFFFLKKDGPLPSACLLALIFVAITLVFVSKNKGLILHVLSFIKHSWQENAKRFCFSRTDSTPIQWYIGDSNGAEDDNQNQRKISREGVEFYSNGDFYEGEFHNGTCNGSGVYNYFLSGRYEGDWVDGRYDGHGVETWAKGSRYRGQYRQGLRHGFGVYKFFTGDYYAGEWCNGQSHGVGLQTCADGSCYVGQFHRGVKHGLGSYYFRNGDRYAGEYFGDKVHGFGIYHFANGHCYEGSWHEGQRQGYGTYTFRNSEAKCGGWDSGSLKQPLSPLSEAVVEAVQASRKAARNAVNLPRLDEQVNKAVVAANRSATAARVAAIKAVQNRMDGKFCDSDV 429
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3962268 3964893 - Cp4.1LG06g06370.1 Cpe06g00640 471420

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00640 429 SMART morn 187 209 IPR003409 -
Cpe06g00640 429 SMART morn 325 346 IPR003409 -
Cpe06g00640 429 SMART morn 233 254 IPR003409 -
Cpe06g00640 429 SMART morn 210 231 IPR003409 -
Cpe06g00640 429 SMART morn 279 300 IPR003409 -
Cpe06g00640 429 SMART morn 256 277 IPR003409 -
Cpe06g00640 429 SMART morn 302 323 IPR003409 -
Cpe06g00640 429 Pfam MORN repeat 327 346 IPR003409 -
Cpe06g00640 429 Pfam MORN repeat 258 279 IPR003409 -
Cpe06g00640 429 Pfam MORN repeat 212 234 IPR003409 -
Cpe06g00640 429 Pfam MORN repeat 189 204 IPR003409 -
Cpe06g00640 429 Pfam MORN repeat 281 303 IPR003409 -
Cpe06g00640 429 Pfam MORN repeat 304 325 IPR003409 -
Cpe06g00640 429 Pfam MORN repeat 235 256 IPR003409 -
Cpe06g00640 429 MobiDBLite consensus disorder prediction 45 64 - -
Cpe06g00640 429 PANTHER RADIAL SPOKE HEAD 10 HOMOLOG B-LIKE 16 422 - -
Cpe06g00640 429 MobiDBLite consensus disorder prediction 1 32 - -
Cpe06g00640 429 PANTHER PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE RELATED 16 422 - -
Cpe06g00640 429 Gene3D - 171 218 - -
Cpe06g00640 429 Gene3D - 310 377 - -
Cpe06g00640 429 Gene3D - 264 309 - -
Cpe06g00640 429 Gene3D - 219 263 - -
Cpe06g00640 429 SUPERFAMILY Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 277 357 - -
Cpe06g00640 429 SUPERFAMILY Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 183 288 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00640 - - - csv:101216886 734.947
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g02040 Cpe06g00640 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00640 Cpe-Chr6:3962268 Cpe17g00265 Cpe-Chr17:1742178 1.47E-103 dispersed
Cpe01g02040 Cpe-Chr1:17330454 Cpe06g00640 Cpe-Chr6:3962268 0 wgd
Cpe13g00606 Cpe-Chr13:5901120 Cpe06g00640 Cpe-Chr6:3962268 0 wgd
Cpe02g00553 Cpe-Chr2:3303583 Cpe06g00640 Cpe-Chr6:3962268 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g292 . Blo12g00674 . Bda03g00530 Bpe02g00076 Bpe04g00484 . . Cmo04g02460 Cmo15g00707 . Cma09g00805 . . . Cpe06g00640 . . . . . . . . Cla08g00565 Cam08g0982 Cec08g0571 Cco08g0681 Clacu08g0690 . Cre08g0504 Cone4ag1389 Cone7ag1546 Cone17ag1274 Cone20ag0452 Lsi04g02379 Csa04g01814 . . . . Bda11g00744 . . . . . . . Cmo09g00798 . . Car04g02278 Car09g00721 Cpe01g02040 . Bhi09g02656 . . . Hepe01g2270 Mch11g0819 . Cla11g01525 Cam11g1585 Cec11g1614 Cco11g1615 Clacu11g1742 Cmu11g1560 Cre11g1976 Lsi08g00414 . Chy07g00660 Cme07g00868
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001672 2 2 3 1 2 1 4 2 1 2 2 2 3 2 2 4 2 4 4 2 2 2 2 2 2 2 2 4 2 1 68
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00640 Cpe_Chr06 FPKM 801.889771 907.373169 0.467202 0.217094 0.235381 0.146727 0.067115 5.133818 2.217824 0.943317