Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00651 ATGGCGACACGTTTTCATCTTCTTCTTCCCCCTCTCTGTTTCCTGCTCTTCACTGTTCTTCTCGCCGCCATAGCCACAGAAGCTCAAGTTCCTGCAAATGCCACCTTCCATTTCGTAAACCAAGGCGAATTCGGCGACCGAATCATTGAATACGACGCCAGCTACCGCGTAATTCGAAACGACGTGTACACCTTCTACACATTCCCCTTCCGCCTCTGTTTTTACAACACCACCCCTGATTCCTTCATTTTCGCCATTAGAGCTGGAATCCCCAACGACGAGAGTTTAATGCGATGGGTTTGGGACGCCAATCGCAACGACCCAGTTCGTGAAAACGCCACCCTCACCTTTGGCCGCGACGGAAACTTCGTCCTCGCCGACGTCGACGGCCGTGTCGTCTGGCAAACCAACACCAAAAACAGAGGAGTCACCGGAATCAAAATGCTCCCTAATGGAAACTTAATCCTCCACGACAAGAACGGGAAATTCATCTGGCAGAGCTTTGATTACCCTACTGATACTCTGTTAGTCGGTCAATCGATTCGAATCGGCAGCCGGAATAAATTAATTAGCCGGAAATCCGAAATCGACGGCTCTGATGGCCCTTACAGCCTTGTTTTAGATCGAACAGGGCTCACGATGTTTCTTTCCCACGACGGTCAGCTTTTAACCTACGGCGGTTGGCCGGGGACGGATCATGGAAGCAGAGTAACATTCGCCGCCGAACCAGAGAATGACAACGCCACCGCGTACGAGCTTCTTCTTTTAGTAAATCAGGACACCCCACGGCGGCGATTGTTACAAGTCCGGCCAATTAGAAGCGGCGGAGCGTTGAATTTGAACAAATTGAACTATAATGCAACGTACTCGTTTCTCCGGCTTAGCCACGACGGGAACTTGAAGGCATTCACGTACTACGATAAAGTGAGTTACTTGAAATGGGAAGAGAGCTTTGCGTTTTTTTCGAGCTATTTCATAAGGGAATGTGCTCTGCCGAGCAAATGTGGGGCTTACGGCTACTGCAACAGGGGAATGTGTGTGGCGTGTCCGAGCCCAAAAGGGCTTTTGGGGTGGAGCGAGAGATGTGCGCCGCCGAAGACGCCGCCGTGCAGCGGCGGAAAAGGGAAATTTGGGTACTATAAGATCGTGGGGGTGGAGCATTTTTTGAACCCGTACAAGGAGGACGGTGAAGGGCCGATTAAGGTTGGGGATTGCAGAGCCAAATGTGATAGAGATTGCAAGTGTTTAGGGTTTATCTATAAGGAGTATAGCTCAAAATGCTTGAGGGTTCCATTGTTGGGAACTTTGATTAAGGATATTAATTCGTCGTCGGTGGGTTATATTAAGTACTCGATTTAG 1359 49.67 MATRFHLLLPPLCFLLFTVLLAAIATEAQVPANATFHFVNQGEFGDRIIEYDASYRVIRNDVYTFYTFPFRLCFYNTTPDSFIFAIRAGIPNDESLMRWVWDANRNDPVRENATLTFGRDGNFVLADVDGRVVWQTNTKNRGVTGIKMLPNGNLILHDKNGKFIWQSFDYPTDTLLVGQSIRIGSRNKLISRKSEIDGSDGPYSLVLDRTGLTMFLSHDGQLLTYGGWPGTDHGSRVTFAAEPENDNATAYELLLLVNQDTPRRRLLQVRPIRSGGALNLNKLNYNATYSFLRLSHDGNLKAFTYYDKVSYLKWEESFAFFSSYFIRECALPSKCGAYGYCNRGMCVACPSPKGLLGWSERCAPPKTPPCSGGKGKFGYYKIVGVEHFLNPYKEDGEGPIKVGDCRAKCDRDCKCLGFIYKEYSSKCLRVPLLGTLIKDINSSSVGYIKYSI 452
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4049263 4050621 - Cp4.1LG06g06550.1 Cpe06g00651 471431

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00651 452 CDD B_lectin 68 171 IPR001480 -
Cpe06g00651 452 PANTHER CURCULIN-LIKE (MANNOSE-BINDING) LECTIN FAMILY PROTEIN-RELATED 13 451 - -
Cpe06g00651 452 PIRSF SLG 1 452 IPR035446 -
Cpe06g00651 452 PANTHER - 13 451 - -
Cpe06g00651 452 Pfam D-mannose binding lectin 100 188 IPR001480 -
Cpe06g00651 452 Gene3D - 70 168 IPR036426 -
Cpe06g00651 452 ProSiteProfiles Bulb-type lectin domain profile. 48 169 IPR001480 -
Cpe06g00651 452 SUPERFAMILY alpha-D-mannose-specific plant lectins 95 221 IPR036426 -
Cpe06g00651 452 SMART blect_4 49 171 IPR001480 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00651 - - - bhj:120085141 867.07
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe06g00651 Cpe14g00373 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00651 Cpe-Chr6:4049263 Cpe14g00373 Cpe-Chr14:2283825 2.02E-121 dispersed
Cpe06g00644 Cpe-Chr6:3979890 Cpe06g00651 Cpe-Chr6:4049263 5.71E-20 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g115 . . . Bda09g00539 . . . . Cmo16g00478 . . Cma09g00816 . Car09g00733 . Cpe06g00651 . . . . . . . . . . . . . . . . . . . . . . . . . Bda05g00788 . Bpe11g00449 . . . . . Cmo09g00811 . Cma16g00443 . . Cpe14g00373 . . . . . . . . . . . . . . . . Csa04g00802 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012283 1 1 1 0 2 0 1 1 0 1 1 1 1 0 1 1 1 0 1 1 1 2 1 1 1 1 1 2 1 0 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00651 Cpe_Chr06 FPKM 19.009901 15.637973 8.920868 9.580646 12.22253 8.132792 10.093795 12.377278 12.58186 12.789474