Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00662 ATGGGAAAGCTTCACTTTCTGTTTTCTTTCTTGTTGTTGTTTGCTGCCATGGTTTCTGGAAGGCATGAAACTCAAAGAACTGCGGGCTCAACAATGGTTGATGGTAAACAGGGCAGGATAGGAGCCATTGTAGATATGAGTTCTAGGATTGGTAAGGAAGAGATTTTAGCTATGCAGATGGCTATAGAGGATTTTAACTCCTTGAGCAATCGAAATTTCAGTCTCGTCGTTAGAGATTCCAGAAGTGATCCCAATCTAGCAGCTCTAGCTGCTAAAGATCTCATCAGTATGCAACGAGTTCAGGTTCTTATAGGGCCCCAAACCTGGGAAGTGGCATCCGTAGTTTCGGAGGTTGGAAATGAGGAGCAGATTCCGGTATTAGCGTTAGCTAACGAAATACCGAAGTGGGCAAACGAGAAGTTCAAATTCTTGGTCCAAGCTTCTCCCTCTCAGTTAAATCAAATGAGAGCTATAGCTGGTATTATCGGTTCATGGGATTGGCGCCTAGTCAATGTTATATATGAAGATAGAGATTTCTCAACCACTGAAATATTTCCTCATCTTGTACATGCCCTCAAAGACGTAGGAGCTGAAGTAAGTGAATTTGTTGGTCTCTCACAATTTGATTCTGATTTATTCACCAAAGAATTGGAGAGGCTAAGAAGAGGGTCGAGCAGAATTTTTGTAGTTCATTTGCCATTCAAGTTGGCACTGCGTTTATTCGAGATAGCAAAAGAGATGAGAATGATGGGAAAGGACTATGTATGGATCACCACCGATACTTTCACAAGCCTTGCACATTCTTTCAATGTTTCTATCAACTCTGTACTACAAGGAGTTGTTGGAGTCAAGAGCTACTTCCCAGAAAAAAATCCTCGATATCGTGACTTTTATCTTCGGTTTTGTCGAAGGTTTAGATTAGAGCATTTTGATGAGGACAACAACGAGCCCGGTATCTTTGCAGTACAGGCTTATGATGCTGCAACGACAGCAGCTATGGCAATGAGTGAAATCCAAGAAAAGGGCAATGATCACTTGTTAGAAAAAATAGAGCTCACTGACTTTCAAGGACTCGGTGGAAAGATTCAGTTTAAGGACAGAAAATTGGCCCCAGCTGATACTTTTCAGATTATCAATACCTTGGGAAGGAGTTATATGGAACTAGGCTTCTGGTCTGATACATTAGGATTCTCGCAAGAGTTGAGGGAAAATTCGTCTTCTAGCTCGTCGATGAAGGATCTTAGCCAAGTGTTTTGGCCAGGTGGATCTTCTGAAACTCCAAAGGGATGGGTCGTACCAACAGATGCCAATCCATTGAGAATTGGGGTGCCAACTGGTTCCATGTTCAAACAGTATGTACAAGTGGAAGAAGATCATAAGGCCTTCAATGGACTTGCAGTTGATCTGTTTAAAGAAACATTAGTCATCCTGCACGCCCCTCTGTCGTACCAGTTCTATCATTTCGATGGCTCATATGATGATTTGGTGAATGAAATCTACTTAAAGAACTTTGACGCAGTTATAGGTGATATAGCCATAATATCACGACGCTATGAACATGCCGAGTTTACACATCCTTACTCTGAAGCAGGACTGGTGATGATAGTTCCTACCACAAATGACACAAGCAACAAAGCATTGTTGTTCACAAAGCCCTTTACTGTGACCATGTGGATTCTAATTGCTGTGGTAACCGTCTACAATGGCTTTGTCGTGTGGTTCATAGAACGAGGTCACTATCCTGAACATGATGGTTCAATGCTTGATGAAGCTGGAGCCATGTTTTTCTCATCCTTCACCACTCTCTTCTCCTTGCACGGCAATAGGCTGCACAGTAACTTATCGCGGATGGCTATGGTGGCGTGGCTATTCATGGCACTTGTGGTAACTCAGACATACACAGCTAATCTTGCCAGCATGCTCACTGTTCAAAAGTTCAAGGCGACTATATCGAATATTGAGACTCTCCAGAAAATGAATGCATATGTGGGAAACGGCAGAGGAACCTTTGTCAAAAGGTATTTGGAAGAAGTTTTGGAATTCCCTACCAAAAATATAAAAAACTACACTGCCCAAGACGATTTAGCTGAGGCTCTCAGAAACCAGGAGATAGCAGCTGCATTTCTTGAAGTCCCTTATGCAAAACTATTCCTCGCAAGATTTTGCAATGAATTCATGATTTCTGGACCAACCTACCATGTTGGAGGATTTGGATTTGCGTTTCCGAGAGGCTTTCCGCTGTTACACGACGTTAACAAAGCACTGCTTAAGGTATTTGAAAGTGGCAAGTATAGAGAGTTGGAAGAAAGCATGATTGCTAGGGAGAAATACCGTTCTTTGGAGATTAATGTTAGCTGTAATCAAGAACTGGGGAAATCACAGGAGGGAATTTTCTCGACAACCAAACGACGTGCTGCTAACCGTCCCAAAGATCTTCCCAAACGCTACAAACCTGCAAATTCAGTTTCTTGGGGGCATGAAACTGAAGGGAACATGAACTTGACGATGGATGATAGTGGAAAGGGCAGAATTGGGGTCATTGTAGACGAGAGTTCTAGGATTGGTAAGGAAGAGATGTTGGCTATGCAGATGGCTGTTGAAGATTTTAACTCCTCCAGGAATCAGAGCTTTAGTCTTGTTATCAGAGACTACAAAACTAAAGAACTCATCAGTATGCAACGAGTTCAGGTTCTTATAGGACCTCAAACCTGGGAAGCGACATCCATAGTTTCCGAGGTCGGAAATGAGAAGCAGACTCCGGTTCTAACGTTAGCTAATGAAATACCAAAGTGGGCAAATGAGAGGTTCAAATTCTTGGTCCAAGCTTCTCCCTCCCAGTTAAATCAAATGAGAGCCATAGCTGGTATCATCGGTTCATGGGATTGGCACCTAGTCAATGTTATATATGAAGATAGAGATTTCTCAACCACTGAAATATTTCCTCATCTTGTTCATGCCCTCAAAGACGTAGGAGCTGAAGTAAGTGAATTTGTTGGTCTCTCACAATTTGATTCTGATTCATTCACCAAAGAATTGGAGAGGCTAAGAAGAGGGTCAAGCAGAGTTTTTGTAGTTCATTTGCCATTCAAGTTGGCATTGCGTCTATTTGAGACAGCAAACGAGATGGGAATGATGGGAAATGGCTACGTTTGGATCACTACTGATTCTTTCACAAGCCTTGCACATTCTTTCAATGCTTCTATCTTCTCTGTATTACAAGGAGTTGTTGGAGTCAAACGCTTCTACCATGAAGACAAGCCTCCATTTCATGAGTTTCATCTTCGGTTCCGAAGACGGTTTAGATTAGAGCATTCTGATGAGGACGAGCACGAGCCTGGTATCTATGCAGTACAGGCTTATGATGCTGCAATGACAGCAGCTATGGCAATGAGTGAAATCCAAGAAAAGGGTAATGACTTGTTGGAACAAATAAAGCTCACTGACTTTCAAGGACTCAGTGGAATGATTCAGTTCAAGGATAGAAAGTTAGCCCCAGCTGATACATTTCAGATTATCAATATCATGGGAAGGACTTATAGGGAGCTCGGCTTCTGGTCTGATAAATCAGGGTTCTCACGAGAGTCGAGGGAAAATTCGTCGTCTAACTCGTCGATGAAGGATCTTAGCCAAGTGTTTTGGCCTGGTGGTTCTTCGGAAACTCCAAGGGGATGGGTTGTACCAACAGATGCCAATCCATTGAGAATTGGGGTGCCAACTGGTTCCATGTTCAAACAGTATGTACAAGTGGAAGAAGATCCTAAGGGAAACAATTTAACCTTCAAAGGACTTGCAATTGATCTGTTTAAAGAAACCATACACAGCCTGCACATCCCTCTGTCGTACGAGTTCTATCGTTTCAATGGCTCATATGATGATTTGGTGAATGAAATCTACTTAAAGAACTTCGATGCAGCTGTCGGTGATATCGCCATAATATCACGACGCTACGACCACGCCGACTTTACACATCCTTACTCCGAAGAAGGACTGGTGATGATAGTTCCTACCAGAAAAGACAAAAGCAACAGATCATTGTTGTTCACAAAGCCCTTTACATTAACCATGTGGATTGCAATTGCTATGATAAATGCCTACAATGGCTTTGTAGTCTGGTTCATAGAACGAAGTCGCTATCCATGTCACGACGGTTCGATGTTTAATCACGCTGGCACCATGCTTTGCTCATCCTTCACGACTCTCTTCTCACTACATGGTAACATGCTGCATAGTAACCTTTCACGGATGACCATGGTGGTTTGGTTGTTTATGGCGCTCGTGATAACTCAAATATATACCGCGAATCTTACAAGCATGCTCACTATTCAAAGACTCGAACCGACTATATCGAATATCGAAACGCTCCAAAGGGCAAACGCTTTAGTCGGATATGGTAAAGGATCCTTTGTCAAAAGATATTTGGAAGAAGTTTTACACTTCCGACCCGAAAACATAAAGAACTACTCCACACCTGACAATCTTTCTGAAGCTCTCAGAAACCAGGAGATATCAGCTGCTTTTCTTGAAGTCCCTTTTGTGAAAATATTCCTTGCTAGATTTTGCAGGGAGTTCATGATTTCTGGGCCAACCTACAAAGTTGGAGGATTTGGATTTGCGTTTCCACGAGGCTCGCCGTTGGTAACGGATATCAACGAAGCATTGCTTAAGGTATCTGAAACTGGGAAGTTCAAAGCTTTGGAAGATAGCATGATTGGTAATGAGACATGTGAGGATGATGATGCAAAGGAGGAAGGTTCACGCCTCTGCCCCAACAGCTTCTTTATACTGTTTGTATTGAGTGGAGGAGTATCAACAATAGCTCTCACATTGTTCATCTTTAATGCCCATAGCTCTAGTTTTCATCAGAACGCTATCTGGAGATTAATGATAGCTGTAATGAGACACTGGGGAAAGCATAGGAGGTCGCCTTCTCGACGAACTATCGAAAGATTAACGATTGTTGAGTATCAATCTTTTCCATCTCCATCTCGTGAAATACTTTCTGTAACTTCCCATGTTCAAGATACATTCGATATCGATCGTAACTTGTAG 5049 42.38 MGKLHFLFSFLLLFAAMVSGRHETQRTAGSTMVDGKQGRIGAIVDMSSRIGKEEILAMQMAIEDFNSLSNRNFSLVVRDSRSDPNLAALAAKDLISMQRVQVLIGPQTWEVASVVSEVGNEEQIPVLALANEIPKWANEKFKFLVQASPSQLNQMRAIAGIIGSWDWRLVNVIYEDRDFSTTEIFPHLVHALKDVGAEVSEFVGLSQFDSDLFTKELERLRRGSSRIFVVHLPFKLALRLFEIAKEMRMMGKDYVWITTDTFTSLAHSFNVSINSVLQGVVGVKSYFPEKNPRYRDFYLRFCRRFRLEHFDEDNNEPGIFAVQAYDAATTAAMAMSEIQEKGNDHLLEKIELTDFQGLGGKIQFKDRKLAPADTFQIINTLGRSYMELGFWSDTLGFSQELRENSSSSSSMKDLSQVFWPGGSSETPKGWVVPTDANPLRIGVPTGSMFKQYVQVEEDHKAFNGLAVDLFKETLVILHAPLSYQFYHFDGSYDDLVNEIYLKNFDAVIGDIAIISRRYEHAEFTHPYSEAGLVMIVPTTNDTSNKALLFTKPFTVTMWILIAVVTVYNGFVVWFIERGHYPEHDGSMLDEAGAMFFSSFTTLFSLHGNRLHSNLSRMAMVAWLFMALVVTQTYTANLASMLTVQKFKATISNIETLQKMNAYVGNGRGTFVKRYLEEVLEFPTKNIKNYTAQDDLAEALRNQEIAAAFLEVPYAKLFLARFCNEFMISGPTYHVGGFGFAFPRGFPLLHDVNKALLKVFESGKYRELEESMIAREKYRSLEINVSCNQELGKSQEGIFSTTKRRAANRPKDLPKRYKPANSVSWGHETEGNMNLTMDDSGKGRIGVIVDESSRIGKEEMLAMQMAVEDFNSSRNQSFSLVIRDYKTKELISMQRVQVLIGPQTWEATSIVSEVGNEKQTPVLTLANEIPKWANERFKFLVQASPSQLNQMRAIAGIIGSWDWHLVNVIYEDRDFSTTEIFPHLVHALKDVGAEVSEFVGLSQFDSDSFTKELERLRRGSSRVFVVHLPFKLALRLFETANEMGMMGNGYVWITTDSFTSLAHSFNASIFSVLQGVVGVKRFYHEDKPPFHEFHLRFRRRFRLEHSDEDEHEPGIYAVQAYDAAMTAAMAMSEIQEKGNDLLEQIKLTDFQGLSGMIQFKDRKLAPADTFQIINIMGRTYRELGFWSDKSGFSRESRENSSSNSSMKDLSQVFWPGGSSETPRGWVVPTDANPLRIGVPTGSMFKQYVQVEEDPKGNNLTFKGLAIDLFKETIHSLHIPLSYEFYRFNGSYDDLVNEIYLKNFDAAVGDIAIISRRYDHADFTHPYSEEGLVMIVPTRKDKSNRSLLFTKPFTLTMWIAIAMINAYNGFVVWFIERSRYPCHDGSMFNHAGTMLCSSFTTLFSLHGNMLHSNLSRMTMVVWLFMALVITQIYTANLTSMLTIQRLEPTISNIETLQRANALVGYGKGSFVKRYLEEVLHFRPENIKNYSTPDNLSEALRNQEISAAFLEVPFVKIFLARFCREFMISGPTYKVGGFGFAFPRGSPLVTDINEALLKVSETGKFKALEDSMIGNETCEDDDAKEEGSRLCPNSFFILFVLSGGVSTIALTLFIFNAHSSSFHQNAIWRLMIAVMRHWGKHRRSPSRRTIERLTIVEYQSFPSPSREILSVTSHVQDTFDIDRNL 1682
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4119484 4129354 + Cp4.1LG06g06620.1 Cpe06g00662 471442

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00662 1682 Pfam Bacterial extracellular solute-binding proteins, family 3 1256 1567 IPR001638 -
Cpe06g00662 1682 Gene3D - 1117 1234 - -
Cpe06g00662 1682 Gene3D - 321 437 - -
Cpe06g00662 1682 SUPERFAMILY Periplasmic binding protein-like II 1210 1567 - -
Cpe06g00662 1682 SUPERFAMILY Periplasmic binding protein-like I 843 1225 IPR028082 -
Cpe06g00662 1682 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 30 783 - -
Cpe06g00662 1682 Gene3D - 438 547 - -
Cpe06g00662 1682 Gene3D - 36 156 - -
Cpe06g00662 1682 Gene3D - 841 951 - -
Cpe06g00662 1682 PANTHER GLUTAMATE RECEPTOR 30 783 - -
Cpe06g00662 1682 Pfam Ligand-gated ion channel 555 709 IPR001320 GO:0015276|GO:0016020
Cpe06g00662 1682 CDD PBP1_GABAb_receptor_plant 39 401 IPR044440 -
Cpe06g00662 1682 Pfam Ligand-gated ion channel 1568 1600 IPR001320 GO:0015276|GO:0016020
Cpe06g00662 1682 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 834 1649 - -
Cpe06g00662 1682 SUPERFAMILY Periplasmic binding protein-like II 416 769 - -
Cpe06g00662 1682 MobiDBLite consensus disorder prediction 808 836 - -
Cpe06g00662 1682 Gene3D - 157 315 - -
Cpe06g00662 1682 Gene3D - 952 1110 - -
Cpe06g00662 1682 SUPERFAMILY Periplasmic binding protein-like I 39 431 IPR028082 -
Cpe06g00662 1682 CDD GluR_Plant 1231 1570 - -
Cpe06g00662 1682 Gene3D - 1516 1577 - -
Cpe06g00662 1682 SMART GluR_14 440 774 IPR001320 GO:0015276|GO:0016020
Cpe06g00662 1682 SMART GluR_14 1234 1572 IPR001320 GO:0015276|GO:0016020
Cpe06g00662 1682 CDD GluR_Plant 437 772 - -
Cpe06g00662 1682 Pfam Bacterial extracellular solute-binding proteins, family 3 457 769 IPR001638 -
Cpe06g00662 1682 PANTHER GLUTAMATE RECEPTOR 834 1649 - -
Cpe06g00662 1682 Gene3D - 548 692 - -
Cpe06g00662 1682 Gene3D - 1345 1486 - -
Cpe06g00662 1682 Pfam Receptor family ligand binding region 858 1174 IPR001828 -
Cpe06g00662 1682 Pfam Receptor family ligand binding region 56 380 IPR001828 -
Cpe06g00662 1682 Gene3D - 1235 1344 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00662 - - - cmax:111476825 1480.31
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe02g00682 Cpe06g00662 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00662 Cpe-Chr6:4119484 Cpe11g00150 Cpe-Chr11:824663 3.01E-31 dispersed
Cpe02g00682 Cpe-Chr2:4302909 Cpe06g00662 Cpe-Chr6:4119484 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g145 Blo03g00683 . . . . . . . . . Cma01g01234 Cma09g00831 . . . Cpe06g00662 Cpe02g00682 Bhi09g03484 . . . Hepe01g1422 Mch11g1029 . Cla11g01725 Cam11g1795 Cec11g1816 Cco11g1822 Clacu11g1954 Cmu11g1764 Cre11g2172 . . . . Lsi04g02033 Csa04g02305 Chy07g00041 Cme07g00553 . . . . . . . . . Cmo01g01287 Cmo09g00824 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001228 1 5 2 2 1 0 0 2 0 3 2 3 2 3 3 2 2 1 2 2 3 3 4 2 2 3 2 4 3 4 68
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00662 Cpe_Chr06 FPKM 18.544466 18.776186 24.861858 24.631294 40.650826 50.488022 43.767262 27.745432 26.857347 28.228973