Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00666 ATGGAGTCTCAGCTCAAGAAGAGCGCTAAACCCAAATTGCTGAACCCTAATTGGGCGCTACTCCAACAAAAACTGAACCCTCATGGTTCAAAGCGATCCTCCAGTGTACCGAAATCCGAAGCCTCGTCAAATACCCTTTTAGGAAAACGCAAGGATAGATCTGATGAGGAGTCAGATCACTCCAACAAGAAACTTCTCATTCCAGTGAACGATGACTTTAGTCTTACAGATGTAGTAGCTATGGATTGTGAAATGGTTGGCGTGGGCCAAGGTAACAAAAGCGCCCTTGGACGAGTTACAGTGGTAAACAAATGGGGGAATGTTATATACGATGAGTTTGTACGTCCTATAGAGCGTGTGGTTGACTTTCGGACTGAAATTAGTGGCATAAGACCCTGCGACCTGAGGAAAGCAAAGGATTTTCCAACTGTCCAGAAGAGAGTGGCGGAATTGATTAAGGGAAGGATTCTTGTTGGCCATGCCTTGCGTAATGATCTTAAGGCATTGCTCTTGAGTCATCCCAAGAAGGATGTGAGAGATACCTCCGAGTATCAGTTCTTCCAGAGGGGAGGATGTAGAAGAGCCCTCCGCCATCTTGCAGCTGAGGTTCTTGGCGTTGAGATTCAAAATGGGGAGCACTGTCCTGTAGAAGATGCTCGTTCTGCAATGCTGCTCTATCAAAAGAAAAGTAAGGAGTGGGAAAAGAGTGTCAAAGCTGAAGTAAAGCTTAAATTGAAGCAGAAGAAACGCAAGCCAAGGAAGAAATCCAAGGATGGAGGTGGTGTTGAATGA 792 45.58 MESQLKKSAKPKLLNPNWALLQQKLNPHGSKRSSSVPKSEASSNTLLGKRKDRSDEESDHSNKKLLIPVNDDFSLTDVVAMDCEMVGVGQGNKSALGRVTVVNKWGNVIYDEFVRPIERVVDFRTEISGIRPCDLRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQRGGCRRALRHLAAEVLGVEIQNGEHCPVEDARSAMLLYQKKSKEWEKSVKAEVKLKLKQKKRKPRKKSKDGGGVE 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4144700 4148786 - Cp4.1LG06g06650.1 Cpe06g00666 471446

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00666 263 MobiDBLite consensus disorder prediction 45 63 - -
Cpe06g00666 263 Gene3D - 74 253 IPR036397 GO:0003676
Cpe06g00666 263 MobiDBLite consensus disorder prediction 1 63 - -
Cpe06g00666 263 MobiDBLite consensus disorder prediction 19 44 - -
Cpe06g00666 263 MobiDBLite consensus disorder prediction 244 263 - -
Cpe06g00666 263 CDD REX4_like 79 227 IPR037431 GO:0006364|GO:0008408
Cpe06g00666 263 PANTHER RNA EXONUCLEASE 4 45 254 - -
Cpe06g00666 263 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 45 254 - -
Cpe06g00666 263 Pfam Exonuclease 79 226 IPR013520 -
Cpe06g00666 263 SMART exoiiiendus 77 235 IPR013520 -
Cpe06g00666 263 SUPERFAMILY Ribonuclease H-like 78 232 IPR012337 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00666 K18327 REXO4, REX4; RNA exonuclease 4 [EC:3.1.-.-] - csv:101211187 453.751
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g02353 Cpe-Chr1:19714336 Cpe06g00666 Cpe-Chr6:4144700 7.73E-12 dispersed
Cpe06g00666 Cpe-Chr6:4144700 Cpe10g00452 Cpe-Chr10:2635130 1.34E-17 dispersed
Cpe06g00666 Cpe-Chr6:4144700 Cpe19g00641 Cpe-Chr19:5174733 2.96E-20 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g155 . . . . . . . . . . . Cma09g00835 . Car09g00750 . Cpe06g00666 . Bhi09g03475 . . . . Mch11g1035 . Cla11g01730 . . . . . . Cone6ag0176 Cone9ag0201 . . Lsi04g02039 . . Cme07g00559 . . . . Bpe11g00451 . . . . . Cmo09g00830 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013924 1 3 0 1 1 0 1 0 0 0 1 0 1 1 1 1 0 2 1 0 0 1 1 1 1 1 1 1 1 1 24
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00666 Cpe_Chr06 FPKM 49.039772 55.474628 62.891659 65.741943 32.288139 31.492826 35.561947 59.819653 61.538914 62.966263