Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00667 ATGTTTGTGAGAGCGCCGCTGCTTAAGGTTTCGTCATTCTACTCAGTCCCATGTCATTCTCTGGTTCCGTTGTCTCTCTCTGCCGCAATTTGTTCTTCTCCACGGACACCTTTAGCTATCCGATGTCATTCATCTCTCCCCACAGCCCACGAACCATCTTCTTCGGCTCCCTCTGAATCCCTCGATGTGGTGCATAATCGTTGGAGGCCCATGTGTTTGTATTACACACAGAGCAAGTGTACAATGATGGATGATCCACTCCACGTAAAGAAGTTCAACCATGATATCTCCAGGGAGCTTCAGGTAGATGTTGCTAGCTCAAAACATATGCGAACTCAGGATATTGAGTTTTTTCTAGTGCTTGATTTGGAGGGAAAAGTTGAAATAATTGAGTTTCCAGTCATATTAGTCAATGCCAAGACACTGGATGTGACGGGTTTTTTCCACAGGTTTGTTAGGCCTTCAAGAATGAGTGAACGAAGGATAAATGAGTACATTGAAGGAAAATATGGCAAGTTTGGAGTTGACCGTGTCTGGCATGACACAGCCATACTGTACAAGGATGTTATACAACAGTTCGAAGATTGGCTGGTTGAGCATCAGCTGTGGAGGAAGGAACTGGGTGGTGTTCTTGATCGAGCAGCATTCGTGACATGTGGAAACTGGGATATAAAAACTCAGGCGACAGGAATGGCGACGATGATGAGACAACTCGAAATACCCTTGGTGGGAAGCCATCATCTTGGTATAGATGACACAAAGAACATCGTGAGAGTGTTGCAGAGAATGGTTGCTGACGGTGCGCATTTGCAGATCACTGCTCGTAGGAATCCCAATTCTCCTCAACAAGTTAAGTTCCGTTTTGAGAACCGTATTTAA 879 45.05 MFVRAPLLKVSSFYSVPCHSLVPLSLSAAICSSPRTPLAIRCHSSLPTAHEPSSSAPSESLDVVHNRWRPMCLYYTQSKCTMMDDPLHVKKFNHDISRELQVDVASSKHMRTQDIEFFLVLDLEGKVEIIEFPVILVNAKTLDVTGFFHRFVRPSRMSERRINEYIEGKYGKFGVDRVWHDTAILYKDVIQQFEDWLVEHQLWRKELGGVLDRAAFVTCGNWDIKTQATGMATMMRQLEIPLVGSHHLGIDDTKNIVRVLQRMVADGAHLQITARRNPNSPQQVKFRFENRI 292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4149833 4153829 - Cp4.1LG06g06670.1 Cpe06g00667 471447

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00667 292 CDD ERI-1_3'hExo_like 118 263 - -
Cpe06g00667 292 PANTHER OS06G0353400 PROTEIN 226 292 - -
Cpe06g00667 292 PANTHER OS06G0353400 PROTEIN 38 227 - -
Cpe06g00667 292 PANTHER 3'-5' EXONUCLEASE ERI1-RELATED 226 292 - -
Cpe06g00667 292 PANTHER 3'-5' EXONUCLEASE ERI1-RELATED 38 227 - -
Cpe06g00667 292 SUPERFAMILY Ribonuclease H-like 115 272 IPR012337 -
Cpe06g00667 292 Gene3D - 228 291 IPR036397 GO:0003676
Cpe06g00667 292 Gene3D - 105 227 IPR036397 GO:0003676
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00667 - - - csv:101211439 499.59
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g171 . . . . . . . . . . . Cma09g00836 . Car09g00751 Sed05g2541 Cpe06g00667 . Bhi09g03472 Tan01g4356 Cmetu07g0939 . Hepe01g1415 Mch11g1036 . Cla11g01731 Cam11g1800 Cec11g1821 Cco11g1827 Clacu11g1959 Cmu11g1769 Cre11g2177 . . Cone14ag1048 . Lsi04g02040 Csa04g02310 Chy07g00046 Cme07g00564 . . . . . . . . . . Cmo09g00831 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011810 0 1 0 1 1 0 1 1 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 2 1 1 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00667 Cpe_Chr06 FPKM 14.241773 15.174664 26.125242 25.817337 124.38578 131.040726 122.477615 18.109215 18.113853 17.618542