Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00673 ATGGCGGCAACTGCAGTTATTAGTTGCTTCTCTCTTCCTTCTAAGTTCAGAAATCTCTCCCTTAATGCTTCTTCCTCTTCTATGCCCCTTTCCCCGTCTTCTTCGACCCTCAGATCTCTCAGTTTCTCCTCCAACGTTTCAGTTTCCGCCTTCTCCAATGGGTGCCTGTCGATTAGTAAAGCTCAGAGGCCATTTCGCTACTCCGTGGTCTGCGAGGCGGCTCCTAAGAAGGCTGATTCTGCTGCAAAAAGGGCTCGGCAGGCTGAGAAAAGACGCGTTTATAATAAAGCTCGGAAGTCTGAAATCAAAACCAGAATGAAGAAGGTTATGGAAGCTTTAGATGATCTGAAGAAGAAACCTGAACCACAATCAGAGGAAGTCCTTCCAATTGAGAAACTCATTGCAGAAGCATTCTCAGTTATCGACAAAGCCGTGAAAGTGGGAACCTTGCACCGAAACACCGCAGCACGTCGAAAATCTCGGCTCGCCAGAAGAAAGAAAGCTGTAGAAATCCACCATGGCTGGTACACCCCAGCTTCACCAGCAGCTGCGTAA 555 47.93 MAATAVISCFSLPSKFRNLSLNASSSSMPLSPSSSTLRSLSFSSNVSVSAFSNGCLSISKAQRPFRYSVVCEAAPKKADSAAKRARQAEKRRVYNKARKSEIKTRMKKVMEALDDLKKKPEPQSEEVLPIEKLIAEAFSVIDKAVKVGTLHRNTAARRKSRLARRKKAVEIHHGWYTPASPAAA 184
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4175602 4178888 + Cp4.1LG06g06600.1 Cpe06g00673 471453

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00673 184 Hamap 30S ribosomal protein S20 [rpsT]. 73 168 IPR002583 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Cpe06g00673 184 TIGRFAM S20: ribosomal protein bS20 78 164 IPR002583 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Cpe06g00673 184 Gene3D Ribosomal protein S20 78 184 IPR036510 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Cpe06g00673 184 PANTHER 30S RIBOSOMAL PROTEIN S20 1 183 IPR002583 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Cpe06g00673 184 Coils Coil 99 119 - -
Cpe06g00673 184 Pfam Ribosomal protein S20 79 165 IPR002583 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Cpe06g00673 184 PANTHER 30S RIBOSOMAL PROTEIN S20, CHLOROPLASTIC 1 183 - -
Cpe06g00673 184 SUPERFAMILY Ribosomal protein S20 79 180 IPR036510 GO:0003723|GO:0003735|GO:0005840|GO:0006412
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00673 K02968 RP-S20, rpsT; small subunit ribosomal protein S20 - csv:101213298 241.121
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe02g00691 Cpe06g00673 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00691 Cpe-Chr2:4353027 Cpe06g00673 Cpe-Chr6:4175602 6.89E-99 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g183 Blo03g00670 . . Bda09g00525 . Bpe08g01012 . . . . Cma01g01223 Cma09g00845 Car01g01045 Car09g00758 Sed05g2552 Cpe06g00673 Cpe02g00691 Bhi09g03459 Tan01g4369 Cmetu07g0293 . Hepe01g1406 Mch11g1044 . Cla11g01738 Cam11g1808 Cec11g1828 Cco11g1834 Clacu11g1968 Cmu11g1778 Cre11g2184 Cone6ag0168 Cone9ag0192 . . Lsi04g02048 Csa04g02320 Chy07g00054 Cme07g00573 . . . . . . . . . Cmo01g01276 Cmo09g00839 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006196 2 1 1 0 2 0 2 0 0 1 1 1 2 1 1 2 0 2 2 1 1 1 1 1 1 1 1 3 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00673 Cpe_Chr06 FPKM 24.137423 27.071672 27.809027 29.465841 17.981001 17.236012 19.122324 23.623161 19.583815 21.786541