Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00678 ATGGCTGATGTGGCGAGTATAGCAGAGGCAGTGGCAGCAAGGTTTAGTTCTTTGGAGCTCATTGGAAGAGGATCTTTTGGTGATGTCTACAAGGGGTTTGACAAGGAGCTTAACAAAGAAGTTGCTATCAAAGTTATTGATTTGGAAGAATCTGAGGATGAAATTGAGGATATTCAACAGGAAATTTCTGTTTTGTCACAATGTCGATCGCCCTACATTACTGAGTACTATGGTTCTTATCTCCACCAGACGAAATTATGGATAATAATGGAATATATGGCTGGTGGCTCCGTTGCAGATCTGCTGCAGTCTGGGCCACCTCTTGATGAAATGTCAATTGCATGCATTCTACGGGATTTGCTGCATGCAATTGATTATTTGCACAGTGAAGGAAAAATTCACAGGGATATTAAAGCGGCAAACATTTTACTGAGTGAAAATGGTGATGTTAAGGTTGCAGATTTTGGTGTTTCTGCCCAATTAACAAGGACAATATCAAGGAGAAAGACATTTGTAGGAACTCCATTCTGGATGGCGCCAGAGGTAATTCAGAATTCTGACGGATACAATGAGAAGGCTGACATCTGGTCCCTAGGAATCACTGCTATTGAAATGGCAAAAGGGGAGCCTCCACTTTCTGATCTTCATCCCATGAGAGTTCTTTTTATCATACCTCGAGAAAGTCCACCTCAGTTGGATGAACATTTTTCTCGCCCTATGAAAGAATTAGTGTCACTTTGTCTGAAGAAAATACCTGCTGAGAGACCTAGTGCCAAAGAGCTTCTGAAGCATCGATTCATTAAGAATGCCAGGAAGAGCCCTAGGCTTCTGGAGAGAATAAGAGAACGTCCGAAGTACCAAATAAAGGACGATGAAGAATCACCAACAAATGGTCCTAGAACTATAGGTGAATCATCAGACACTGTGAAAGTATCAAGAAATTTAAGAGAGGAAACTGTTCGTGCCAGCAACCAGAGTAAAGCTCCGAAGAATGCTGGATGGGACTTTAGTATTGGGGGTCCACATAGTACAGGTACTGTTCGAAGTTTAGTAAAACCACCTCAAATTAGGGAACGAAAACCAGAAATTCCTTATGGTCAGGCTGCACCTAGTAGAGCTGCAGAGAGTGGTCACTGGCAAGCTGCATCTGGAAGTGCACCACGCGACATAGCAAAAAATGCTAAAGATTCATTCAATATGGGAGATGATAGTGAAGATGCTTACAGAGTAAATTTGGCTGCAATAACAAGGCTTCATGGACTTTCACTTGTTCCAGAAGTTCTAATTATCCTTGCTATTGCAGCCAAGTTTAGAACCATTGTAGTCCGGTCTCCCAGAGGACCTCAAGCATCTACTCAATTTCATAATGAAAGCAATCCGTCTGGAAGCATACAAGCATATTTTGAGGACACATCTTATGGTGGTACTGTTGTTATGCGTGGTCAACGGGATGGTTCTGAGTCTCCTCGGACTCCAAAATCCAGATTTGGAATTCAAGAAAGGAATTCAAGTTTGCCTCCTGAAGATAGTGCATCAAACCTTGCGGAGGCAAAGGCTGCAATGCAAGCAGGATTGAAGAAATCTAATGTAAGGGATAGACCAGCTCTCACTAAACGCAACGACAGGCAGGAAATTAGGAAAACAGAGCAAACAGTGAGTAGCTCTGACTCTTCAAGGCATTCTCGTGAATTCTTTGATGCACCAAAAGCATTGGCAAAACCATCTCTACCGATTGACAATGAAGAAAGTAGAAAAGTAGTGTCGTCTTCTGCACCATTATCAGTTTTGTTTATGTCATCCTTGAAAGAGGTAGTTGTAGATGATTCAGAAGGATCGCCTGCTCATACTGTAATTAATGCTCTTATAAGTATGGAACACCGAAAACCTGGATCCTGTGAGGTTCTTGTTACCAAGTTGCTCCAGAAATTGGCCAGTTCCGAGGAATCTTCACTGAAGGATTTACAAGACTTGGCAACTCGCATATTCACCAAGGCAAAGACAGTTCCTGATGTCACGGATTCTGATAGCAGCAAAAAGCAACCGAACAGGGAACTTCATTCAAATTCTAATTTGAGCTCGCTTGCTAGATTTTTACTCTCCAGATGGCAAGGTCAGGTGTCGAGGGATCTGAGTCCAGCTTAA 2142 42.39 MADVASIAEAVAARFSSLELIGRGSFGDVYKGFDKELNKEVAIKVIDLEESEDEIEDIQQEISVLSQCRSPYITEYYGSYLHQTKLWIIMEYMAGGSVADLLQSGPPLDEMSIACILRDLLHAIDYLHSEGKIHRDIKAANILLSENGDVKVADFGVSAQLTRTISRRKTFVGTPFWMAPEVIQNSDGYNEKADIWSLGITAIEMAKGEPPLSDLHPMRVLFIIPRESPPQLDEHFSRPMKELVSLCLKKIPAERPSAKELLKHRFIKNARKSPRLLERIRERPKYQIKDDEESPTNGPRTIGESSDTVKVSRNLREETVRASNQSKAPKNAGWDFSIGGPHSTGTVRSLVKPPQIRERKPEIPYGQAAPSRAAESGHWQAASGSAPRDIAKNAKDSFNMGDDSEDAYRVNLAAITRLHGLSLVPEVLIILAIAAKFRTIVVRSPRGPQASTQFHNESNPSGSIQAYFEDTSYGGTVVMRGQRDGSESPRTPKSRFGIQERNSSLPPEDSASNLAEAKAAMQAGLKKSNVRDRPALTKRNDRQEIRKTEQTVSSSDSSRHSREFFDAPKALAKPSLPIDNEESRKVVSSSAPLSVLFMSSLKEVVVDDSEGSPAHTVINALISMEHRKPGSCEVLVTKLLQKLASSEESSLKDLQDLATRIFTKAKTVPDVTDSDSSKKQPNRELHSNSNLSSLARFLLSRWQGQVSRDLSPA 713
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4198781 4209280 - Cp4.1LG06g06880.1 Cpe06g00678 471458

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00678 713 Gene3D Transferase(Phosphotransferase) domain 1 12 301 - -
Cpe06g00678 713 SMART serkin_6 15 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe06g00678 713 PANTHER STERILE20-LIKE KINASE, ISOFORM B-RELATED 439 711 - -
Cpe06g00678 713 CDD STKc_MST3_like 14 287 - -
Cpe06g00678 713 MobiDBLite consensus disorder prediction 492 510 - -
Cpe06g00678 713 PANTHER STERILE20-LIKE KINASE, ISOFORM B-RELATED 1 392 - -
Cpe06g00678 713 Pfam Protein kinase domain 16 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe06g00678 713 MobiDBLite consensus disorder prediction 668 687 - -
Cpe06g00678 713 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Cpe06g00678 713 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 439 711 - -
Cpe06g00678 713 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 1 392 - -
Cpe06g00678 713 MobiDBLite consensus disorder prediction 531 549 - -
Cpe06g00678 713 MobiDBLite consensus disorder prediction 278 297 - -
Cpe06g00678 713 SUPERFAMILY Protein kinase-like (PK-like) 13 322 IPR011009 -
Cpe06g00678 713 MobiDBLite consensus disorder prediction 278 395 - -
Cpe06g00678 713 MobiDBLite consensus disorder prediction 477 568 - -
Cpe06g00678 713 ProSiteProfiles Protein kinase domain profile. 15 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe06g00678 713 Coils Coil 41 68 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00678 K08838 STK24_25_MST4; serine/threonine-protein kinase 24/25/MST4 [EC:2.7.11.1] - csv:101214412 1149.42
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe02g00695 Cpe06g00678 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00678 Cpe-Chr6:4198781 Cpe08g00913 Cpe-Chr8:7182865 5.92E-70 dispersed
Cpe19g00079 Cpe-Chr19:570282 Cpe06g00678 Cpe-Chr6:4198781 2.31E-35 dispersed
Cpe03g01392 Cpe-Chr3:11203371 Cpe06g00678 Cpe-Chr6:4198781 1.12E-35 transposed
Cpe09g00224 Cpe-Chr9:1284728 Cpe06g00678 Cpe-Chr6:4198781 1.16E-79 transposed
Cpe02g00695 Cpe-Chr2:4370141 Cpe06g00678 Cpe-Chr6:4198781 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g189 . . . . . . . . . . Cma01g01216 Cma09g00851 Car01g01040 Car09g00765 . Cpe06g00678 Cpe02g00695 Bhi09g03449 . . . . Mch11g1051 . Cla11g01746 Cam11g1814 Cec11g1834 Cco11g1840 Clacu11g1974 Cmu11g1784 Cre11g2191 Cone6ag0161 Cone9ag0187 Cone14ag1056 . Lsi04g02056 Csa04g02327 Chy07g00059 Cme07g00580 . . . . . . . . . Cmo01g01271 Cmo09g00844 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe06g00678 CST 1 711 MAP Kinase Kinase Kinase Kinase AT1G53165 59.1 1.4e-213 740.0
Cpe02g00695 CST 1 656 MAP Kinase Kinase Kinase Kinase AT1G53165 53.8 6.5e-187 651.4
Cpe06g00678 CST 1 710 MAP Kinase Kinase Kinase Kinase AT3G15220 60.9 2.0e-220 762.7
Cpe02g00695 CST 1 655 MAP Kinase Kinase Kinase Kinase AT3G15220 55.3 3.4e-191 665.6
Cpe09g00224 . 268 533 MAP Kinase Kinase Kinase Kinase AT3G15220 50.9 1.4e-67 255.0
Cpe09g00224 . 4 857 MAP Kinase Kinase Kinase Kinase AT1G69220 57.9 9.2e-241 830.5
Cpe06g00678 CST 23 268 MAP Kinase Kinase Kinase Kinase AT1G69220 52.6 9.4e-68 255.8
Cpe13g00900 CCT,ECH 1 623 MAP Kinase Kinase Kinase Kinase AT5G14720 59.7 2.9e-216 748.8
Cpe01g02349 CCT,ECH 1 623 MAP Kinase Kinase Kinase Kinase AT5G14720 58.0 6.3e-211 731.1
Cpe08g00913 CCT 7 745 MAP Kinase Kinase Kinase Kinase AT4G24100 62.3 2.4e-240 828.9
Cpe14g01014 CCT 7 844 MAP Kinase Kinase Kinase Kinase AT4G24100 51.9 1.2e-210 730.3
Cpe08g00913 CCT 11 746 MAP Kinase Kinase Kinase Kinase AT4G10730 62.0 4.8e-238 821.2
Cpe14g01014 CCT 11 844 MAP Kinase Kinase Kinase Kinase AT4G10730 52.4 6.3e-214 741.1
Cpe08g00913 CCT 5 364 MAP Kinase Kinase Kinase Kinase AT1G70430 57.5 1.4e-116 417.5
Cpe14g01014 CCT 226 507 MAP Kinase Kinase Kinase Kinase AT1G70430 59.4 1.0e-95 348.2
Cpe13g00900 CCT,ECH 1 249 MAP Kinase Kinase Kinase Kinase AT1G23700 61.9 6.4e-80 295.4
Cpe01g02349 CCT,ECH 6 249 MAP Kinase Kinase Kinase Kinase AT1G23700 61.9 3.0e-77 286.6
Cpe08g00913 CCT 17 306 MAP Kinase Kinase Kinase Kinase AT1G23700 50.9 8.9e-74 275.0
Cpe03g01498 . 32 509 MAP Kinase Kinase Kinase Kinase AT4G14480 57.1 2.8e-144 509.2
Cpe13g00900 CCT,ECH 5 249 MAP Kinase Kinase Kinase Kinase AT4G14480 50.4 8.7e-69 258.5
Cpe01g02349 CCT,ECH 5 249 MAP Kinase Kinase Kinase Kinase AT4G14480 50.4 1.4e-66 251.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005838 1 3 1 1 1 0 2 1 0 1 1 1 2 1 1 2 0 3 2 1 1 1 1 1 1 1 1 2 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62478 PF00069 Pkinase 2.20E-68 CL0016 Cpe PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00678 Cpe_Chr06 FPKM 13.198895 15.149199 17.646559 19.442142 2.290924 1.751482 2.122679 14.73947 15.070156 13.931997