Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00680 ATGACTGGGAAAGAGATTCTCCATAAGATGAAGGAGAACTCTCCTTGTGTTAAGATAGCAGTTTGGAGTGATGGGTTGATGGGTTTTCCTTCTTTCATTTTGACTCTTGAAGAAAAAGTTGGGCTCGGTTCGTCCGATCCGGACTCAGGAAAAGGAAAGAGCAAGATGTCGAAGCATGTCACACATGGTTATCATTTGGTGAAAGGGAAATCGAACCATGCCATGGAAGATTACGTGGTTGCCGAGTTTAAGCAAGTTGATCATCATGAGCTCGGTTTATTTGCAATCTTCGATGGCCATTTGAGCAACTCTATCCCTGATTATTTACAGTCCCATCTATTTGCTAATATCATAAACGAGCCTGATTTCTGGACGAACCCAACGGACGCAGTCAGGAAAGCATACGAGGCAACCGATGCTTACATTTTAGAGAAAGCTGTTGATTTTAGTCATGGGGGTTCGACTGCTGTTACAGCCATATTGATTGACTGTAAGAAACTAGTAGTCGGTAATGTGGGGGACTCCCGTGCAGTTATCTGTCGTAACGGTAAAGCCAGTCAATTATCAATCGATCACGAACCGAGCGTTGAAAGAAAAAGCATAGAGGACAGAGGTGGTTTCGTTTCAAACTTTCCTGGAGATGTTCCACGTGTCGACGGGCAGTTGGCGGTCGCAAGGGCATTTGGTGATAGGAGCTTAAAGAAACATTTGAGTTCCGAGCCTTACGTGGTTGTGGAGACAATCGACGACGAGACCGAATTGGTTATCTTAGCAAGCGACGGATTGTGGAAGGTTATGTCGAACGAGGAAGCTGTCGAGTCGATCAGGCATCTGAAAGACGCTCAAGCAGCTGCCAAACACCTGACAGAAGAGGCCCTCAAGAGGAAGAGCAGAGATGATATTTCTTGTATAGTTGTGAGATTTCTGTGA 930 45.27 MTGKEILHKMKENSPCVKIAVWSDGLMGFPSFILTLEEKVGLGSSDPDSGKGKSKMSKHVTHGYHLVKGKSNHAMEDYVVAEFKQVDHHELGLFAIFDGHLSNSIPDYLQSHLFANIINEPDFWTNPTDAVRKAYEATDAYILEKAVDFSHGGSTAVTAILIDCKKLVVGNVGDSRAVICRNGKASQLSIDHEPSVERKSIEDRGGFVSNFPGDVPRVDGQLAVARAFGDRSLKKHLSSEPYVVVETIDDETELVILASDGLWKVMSNEEAVESIRHLKDAQAAAKHLTEEALKRKSRDDISCIVVRFL 309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4218014 4221422 + Cp4.1LG06g06790.1 Cpe06g00680 471460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00680 309 ProSiteProfiles PPM-type phosphatase domain profile. 61 308 IPR001932 -
Cpe06g00680 309 SUPERFAMILY PP2C-like 57 308 IPR036457 -
Cpe06g00680 309 Gene3D - 55 309 IPR036457 -
Cpe06g00680 309 PANTHER PROTEIN PHOSPHATASE 2C 39-RELATED 35 308 - -
Cpe06g00680 309 PANTHER PROTEIN PHOSPHATASE 2C 35 308 IPR015655 GO:0004722|GO:0006470
Cpe06g00680 309 Pfam Protein phosphatase 2C 73 301 IPR001932 -
Cpe06g00680 309 SMART PP2C_4 53 306 IPR001932 -
Cpe06g00680 309 CDD PP2Cc 62 308 IPR001932 -
Cpe06g00680 309 ProSitePatterns Glycosyl hydrolases family 5 signature. 113 122 IPR018087 GO:0004553|GO:0005975
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00809 Cpe-Chr4:7626449 Cpe06g00680 Cpe-Chr6:4218014 3.15E-134 dispersed
Cpe06g00680 Cpe-Chr6:4218014 Cpe09g00038 Cpe-Chr9:231284 6.24E-54 dispersed
Cpe06g00680 Cpe-Chr6:4218014 Cpe14g00210 Cpe-Chr14:1175110 2.72E-114 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00680 K17506 - csv:101215129 492.656