Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00681 ATGGAGGCAAAGAGCTATGAAGGCAAGCATAATCTTAAAGATAAGGCGTATAAGGAAGGTGTGATCGACGACGATTTAGAATACGAGACAGAGGAGGAAGACGTTGGCGGAGGAGGCCATGGTGGTACCAATGCTTGCACTGCATTGGGTTATTACGAGAACGAGAAGAAGAAAAGAGGGACAGCAGTTTCTGGCCGTGGACGATCTGGTAGCGGCGTCTCTTCGCCGAGTTGCCAAGCACACAACTGCACAACAGATTTGAGTGAAGCAAAGAGGTATCACCGTCGCCACAAGGTCTGCGAGTTTCACTCGAAGGCAGCCGTCGTCATGGTCGCAGGAATTCGCCAACGTTTCTGTCAGCAATGCAGCAGGTTCCATGAGTTGACAGAATTCGACGAAGCTAAAAGGAGCTGTCGTCGGAGGCTAGCAGGGCATAACGAACGACGAAGGAAGAGCTCGGCCGAGTGTCAAGGAGAAAGCACGAACCGTAAAGGATCAGTGTCGCAGTCGAAGGAAGGCCATTGCAGGCAGCTAATGGAAGATCAAAGAAGCAGAATTCAGATGGCTCCTACAGGAAGCTCTGGCTATAAACACCTGCATATCAGATAA 609 50.41 MEAKSYEGKHNLKDKAYKEGVIDDDLEYETEEEDVGGGGHGGTNACTALGYYENEKKKRGTAVSGRGRSGSGVSSPSCQAHNCTTDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQQCSRFHELTEFDEAKRSCRRRLAGHNERRRKSSAECQGESTNRKGSVSQSKEGHCRQLMEDQRSRIQMAPTGSSGYKHLHIR 202
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4221309 4221988 - Cp4.1LG06g06840.1 Cpe06g00681 471461

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00681 202 MobiDBLite consensus disorder prediction 158 173 - -
Cpe06g00681 202 Pfam SBP domain 78 151 IPR004333 GO:0003677
Cpe06g00681 202 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 11 202 - -
Cpe06g00681 202 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 11 202 IPR044817 GO:0003677
Cpe06g00681 202 SUPERFAMILY SBT domain 76 155 IPR036893 GO:0003677|GO:0005634
Cpe06g00681 202 MobiDBLite consensus disorder prediction 143 202 - -
Cpe06g00681 202 ProSiteProfiles Zinc finger SBP-type profile. 75 152 IPR004333 GO:0003677
Cpe06g00681 202 Gene3D - 68 139 IPR036893 GO:0003677|GO:0005634
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00681 - - - csv:101215375 305.449
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00681 Cpe-Chr6:4221309 Cpe08g00634 Cpe-Chr8:4216783 2.01E-36 dispersed
Cpe04g00811 Cpe-Chr4:7635346 Cpe06g00681 Cpe-Chr6:4221309 3.97E-54 transposed
Cpe17g00395 Cpe-Chr17:2897648 Cpe06g00681 Cpe-Chr6:4221309 5.98E-38 transposed
Cpe19g01027 Cpe-Chr19:7133221 Cpe06g00681 Cpe-Chr6:4221309 5.71E-09 wgd
Cpe20g00443 Cpe-Chr20:2542327 Cpe06g00681 Cpe-Chr6:4221309 4.36E-46 wgd
Cpe06g00681 Cpe-Chr6:4221309 Cpe09g00831 Cpe-Chr9:7660656 4.75E-17 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g192 . . . Bda09g00515 . . . . . . . Cma09g00854 . Car09g00768 Sed04g2406 Cpe06g00681 . Bhi09g03443 Tan01g4381 Cmetu07g2111 . Hepe01g1395 Mch11g1055 . Cla11g01751 Cam11g1819 Cec11g1839 Cco11g1845 Clacu11g1979 Cmu11g1789 Cre11g2196 Cone6ag0159 Cone9ag0183 . . Lsi04g02062 Csa04g02332 Chy07g00064 Cme07g00585 . . . . . . . . . . Cmo09g00847 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002919 1 2 1 1 2 1 2 2 1 1 2 2 2 1 1 2 1 3 2 2 1 2 2 2 2 2 2 2 2 2 51
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49677 PF03110 SBP 1.60E-31 No_clan Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00681 Cpe_Chr06 FPKM 0.176955 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.312746 0.0