Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00682 ATGCCGGAAAACGAATACGACCCTCTTCTCCAAGTTACCGATGCCGGCGACGGCGCAAACGCCTCCGACTCATGGAAGAAAGTGTTCGATAAAGAGGAGTTCAACAAACAGTTCTCCATTTCATTTCCCATGATTCTCACTAATGTTTTCTACTACTTAATCCCTTTGATTTCCGTCATGTTCGCCGGTCATCTCGGCGACCTCGAACTTGCCGGAGCCACTCTCGCTAATTCCTGGGCCACCGTCACCGGATTCGCTTTCATGACGGGTTTGAGTGGCGCATTGGAGACACTCTGTGGCCAAGGATTTGGGGCGAAACTGTACCGATTTTTAGGGATTCATCTGCAATCCTCGTGTATAATCTCTTTCTCCTTCTCGATTTTCATTTCCCTTCTCTGGTTCTACACAGAGCCGGTCTTGATTTTGCTGCAGCAGGATCCCGCCGTGTCGAAAACGGCTGCACGGTATATGAAATTTCTGGTTCCTGGGCTGTTTGCTTATGGGTTTTTGCAGAATAGTGTGAGGTTTATTCAGGCTCAATCTGATGTTATGTTTTTGGCTGTGCTCTCTGGTATTCCGTTGGTTCTTCATGTTGGTGTTGCTTATGGTTTTGTGAACTGGACGAGTTTGGGGCTGGAAGGAGCTGCTATGGCAGCTTCTATTTCATTGTGGGTGGCTTTCTTGGTTGTGGCTGTTTATGTGTTTAAGTCTGAGAAGTATAAGCGTACATGGGAAGGATTCTCTGTTGAAGCTTTTAGTTACATAGTATTCAATTTGAAACTTGCTTTGCCATCTGCTGCAATGTGTAAACACAGAAGCCATTGCCTACATGATCACATATGGACTCAGTGCAGCTGCAAGGTATACAAATCTCTCCTCTTTTACTTCCTTGTTTTCTCCATGCCCTCTCCCTCCAATATCATAACAAAAGACACAACCATCTTGAACAGCACAAGGGTGTCAAATGAGCTGGGGGCAGGCAACCCTGATAGAGCAAGACAAGCCATGTTTGTCACTCTTCTACTCTCATTCCTTCTAGGCCTTTCAGTCGTTCTTCTTCTAGCATTTGGCCACAACATCTGGGCAGGATTCTTCAGTAGTAGTCCTGTAATTATACAAGCCTTTGCCTCCATGACACCCCTTCTCACCATTTCCGTGCTCGCCGATTCTGTCCAAGGCGTATTATCAGGGGTGGCTAGAGGATGTGGTTGGCAACACATGGTTGTGGTTGTAAACTTAGCTACATTCTATCTTGTTGGTATCTCAACAGCAGTCTTTCTGGAATTCAGAATGAAGCTTTATGCCACGGGGTTGTGGATTGGTTTGATCTGTGGCTTGTTATGCCAAACTTTGACACTGTTGGTATTAATAGTTCGCTCAAAGTGGACAAGAATTGAGCTGTCTGATCATGGAGGTTTATTTAATAGTTCAAATTCTTGGGCTAATCTGCCCCTGCTGCCTGCACCACACGAGCTCTCTCCAGCTCCTGGCCAACGACCTGAAGCAGCCCACCCTTCTCTTCAACCTATATAA 1533 46.05 MPENEYDPLLQVTDAGDGANASDSWKKVFDKEEFNKQFSISFPMILTNVFYYLIPLISVMFAGHLGDLELAGATLANSWATVTGFAFMTGLSGALETLCGQGFGAKLYRFLGIHLQSSCIISFSFSIFISLLWFYTEPVLILLQQDPAVSKTAARYMKFLVPGLFAYGFLQNSVRFIQAQSDVMFLAVLSGIPLVLHVGVAYGFVNWTSLGLEGAAMAASISLWVAFLVVAVYVFKSEKYKRTWEGFSVEAFSYIVFNLKLALPSAAMCKHRSHCLHDHIWTQCSCKVYKSLLFYFLVFSMPSPSNIITKDTTILNSTRVSNELGAGNPDRARQAMFVTLLLSFLLGLSVVLLLAFGHNIWAGFFSSSPVIIQAFASMTPLLTISVLADSVQGVLSGVARGCGWQHMVVVVNLATFYLVGISTAVFLEFRMKLYATGLWIGLICGLLCQTLTLLVLIVRSKWTRIELSDHGGLFNSSNSWANLPLLPAPHELSPAPGQRPEAAHPSLQPI 510
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4234428 4241607 + Cp4.1LG06g06800.1 Cpe06g00682 471462

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00682 510 Pfam MatE 317 424 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cpe06g00682 510 Pfam MatE 43 202 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cpe06g00682 510 CDD MATE_eukaryotic 33 464 IPR045069 GO:0042910|GO:1990961
Cpe06g00682 510 TIGRFAM matE: MATE efflux family protein 43 439 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cpe06g00682 510 PANTHER MULTIDRUG RESISTANCE PROTEIN 17 269 - -
Cpe06g00682 510 PANTHER MULTIDRUG RESISTANCE PROTEIN 317 472 - -
Cpe06g00682 510 PANTHER PROTEIN DETOXIFICATION 17 269 - -
Cpe06g00682 510 PANTHER PROTEIN DETOXIFICATION 317 472 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00682 K03327 TC.MATE, SLC47A, norM, mdtK, dinF; multidrug resistance protein, MATE family - csv:101203764 661.759
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00682 Cpe-Chr6:4234428 Cpe14g00336 Cpe-Chr14:2038798 2.04E-146 dispersed
Cpe06g00682 Cpe-Chr6:4234428 Cpe04g01386 Cpe-Chr4:11213709 5.19E-81 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g196 . . . . Bpe09g00238 . . Bma13g00945 Cmo16g00434 . . . . . . Cpe06g00682 . . . . . . . . . . . . . . . . Cone9ag0179 . . Lsi04g02064 Csa04g02334 Chy07g00066 . . Blo10g00758 . . . . . . . . . . Cma16g00400 . Car16g00366 . . . . . . . . . Cla05g01005 Cam05g1094 Cec05g1104 Cco05g1097 Clacu05g1090 Cmu05g1041 Cre05g1114 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001632 1 2 4 2 2 0 2 2 0 2 1 2 2 2 2 2 1 2 2 1 1 3 4 3 4 2 2 4 8 2 67
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00682 Cpe_Chr06 FPKM 50.155491 47.784176 21.42384 23.120882 1.197395 1.655191 1.043786 6.965088 7.649213 6.409659