Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00688 ATGTGGATAGCAATGGAGGCATCATTTGATCCGCTTAGGAACCGGGATGATATATCTGGGGTTTGTGAGGAAGATATATTAGCTGATCCTTATTTGCGTTCACTTAAAGGGAATGATATTAGCTTAAGGCAATGGTTGGATAAGCCAGGAAGATCCGTGGATGCTCTTGAATGTCTTCATATATTTAGGCAAATTGTGGAGATTGTTAGTATTGCTCATGCTCAAGGCATTGTTGTTCATAATGTGCGTCCTTCATGCTTTGTGATGTCTTCTTTCAACCATGTAACGTTTATTGAGTCGGCATCGTGTTCGGATTCCGGGTCTGATTCTCTTGAGGAGGATGGTTTAAGTAGTCAAATGGCTGAGGTTAAAACATCGTCTTCTCCGTTTCCAAGCAGCCTTGGAAGCGAGGGCTTTCGATCGGTTATGACCCCCGTTAACGCTTTGTCGGAGACTAGTTGTATGCAGTCGAGTTCAGTATATGCAGCTCAAGTATCGTTAAATGAAGGGTCTGGAGAATGTAGAAGAAAAGATAGCAGACATGTTGAAGAAACAGAAAATAAGTTGCAATCATTTCCAATGAAGCAGATATTGGCTATGGAGACTACTTGGTACACTAGCCCAGAAGAAGCTTCTGATGGCCCAAGTTCGAGCGCTTCAGATATCTACCGGTTAGGAGTTCTTCTTTTTGAGTTATTCTGCTCCTTCAGCTCGAGAGAAGGGAAGAGTAGAATTATGTCGAGCTTGAGGCATAGAGTGCTTCCTCCTCAATTGCTGTTGAAGTGGCCAAAAGAAGCTTCATTTTGCTTATGGTTACTGCATCCCGACCCAAGTAATCGACCTAAGCTAAGGACTAAGACTACGAATGTTTCTTCTTACCTAAAGATCAGATCCTGGTCCAACTTGGATAATATTAAGATGTTAAGAGTACAATTGCAACGAGGAGTATCAAGATCAGGATCTGATCCTGGTCCAAAGAGTGAATTTCTCAATGAATCAAAAGATGAACTAGAAGAACGTGAAACAGCAATTGAGCTTAGAAAAAGAATTGAAGAGCAGGATTTACTGCTAGAATTCCTTTTGCTTATGCAACAAAGAAAGCAGGAAGCTGCTCGTAAGCTGCAAGATACCATTTCATTTCTGTGCAGTGATATCGAACAAGTTATGAGGCACCAAACTAATTTCAAGAAAAAGATCGGGTCGCACCCAGATCTTTCGAAGGACAATTGTTTGTCATTAAATCTCCCTTCAATGACTCCTTCTGCTGGATTGGGATCAAGGAAACGATTTAGACCAGGAATTTTGGTCCATGATATAGAAGCATGCGGTGATAACGTTGATGACAGTGAGAAGTCAAGTTCAGACAATGAAAACGAACAAGGTGTACTTTTTAAGAGTTCTCGATTAATGAAGAACTTCAAGAAATTGGAGTTAGCGTATTTGTTGATGAGAGGTAGAGTAAACAAGCCATCGGGGAGGCAGTTTGTTAAACACTCGTCAATAAGTAGCGATGGTAGGGGGTCTGTAGTTTTGACTGAAAGAAGTTCGGTTAATAATTTGGCTTCAAAAGAGAGTTGCAATGATAATCGACAAGGCGGGTGGATAAGTCCGTTCCTGGAGGGTTTGTGCAAGTATCTATCCTTTAGCAAGTTGAAAGTCAAGGCAGACTTGAAGCAAGGAGATCTATTGAATTCCTCCAACTTAGTATGTTCTCTCAGTTTCGATCGAGATGGGGAATTTTTTGCCACAGCCGGTGTTAATAGGAAAATTAAAGTGTTTGGATATGACTCAATCGTGAACGAAGACCGTGACATTCATTACCCTGTTGTTGAAATGGCTAGCAGGTCGAAACTAAGCAGTGTTTGTTGGAATCGGTACATCAAAAGTCAAATTGCTTCGAGTAATTTTGAAGGTGTAGTGCAGGTATGGGATGTCACGAGAAGTCAAGTAGTCACTGAAATGGGAGAACACGAGAGGCGCGTATGGTCCATTGACTTTTCATCAGCGGATCCAACAATATTGGCTAGCGGAAGTGACGATGGTTCAGTTAAGCTCTGGAGTATCAATCAGGCAATTCTATTTTTGCACTTGGTGGATGTCAGCTTTGAAACTAAACGTACTACAGGTTCAAGTATCGGCACGATCAGAACGAAAGCCAATGTCTGCTGTGTACAATTTCCTGCGGATTCTGGTCGGTCCCTTGCATTTGGTTCAGCTGATCACAAAATTTATTACTACGACATGCGGAATATACGAGTGCCTTTGTGCACCTTCACTGGACATAACAAAACTGTGAGTTACGTCAAGTATATAGACTCGAGCACTCTTGTTTCTGCATCCACCGATAACACCTTGAAGCTCTGGGATTTGTCCATGTGCACATCCCGGGTTATTGATTCTCCAGTCCTGTCCTTCACTGGCCACATGAACATAAAGGTTTTTATCTACCACAAAGCCTTTCCAATGCCAGCATTGTCGTATAAGTTTCAAATGGATCCTCTTACCAGTCATGAAATGGACGACTCCGCACAATTTATCTCTTCGGTTTGTTGGCGAGGCCAGTCGTCTTCATTAGTAGCTGCAAACTCAACTGGGCACATCAAAATTTTGGAAATGGTTTAG 2622 41.99 MWIAMEASFDPLRNRDDISGVCEEDILADPYLRSLKGNDISLRQWLDKPGRSVDALECLHIFRQIVEIVSIAHAQGIVVHNVRPSCFVMSSFNHVTFIESASCSDSGSDSLEEDGLSSQMAEVKTSSSPFPSSLGSEGFRSVMTPVNALSETSCMQSSSVYAAQVSLNEGSGECRRKDSRHVEETENKLQSFPMKQILAMETTWYTSPEEASDGPSSSASDIYRLGVLLFELFCSFSSREGKSRIMSSLRHRVLPPQLLLKWPKEASFCLWLLHPDPSNRPKLRTKTTNVSSYLKIRSWSNLDNIKMLRVQLQRGVSRSGSDPGPKSEFLNESKDELEERETAIELRKRIEEQDLLLEFLLLMQQRKQEAARKLQDTISFLCSDIEQVMRHQTNFKKKIGSHPDLSKDNCLSLNLPSMTPSAGLGSRKRFRPGILVHDIEACGDNVDDSEKSSSDNENEQGVLFKSSRLMKNFKKLELAYLLMRGRVNKPSGRQFVKHSSISSDGRGSVVLTERSSVNNLASKESCNDNRQGGWISPFLEGLCKYLSFSKLKVKADLKQGDLLNSSNLVCSLSFDRDGEFFATAGVNRKIKVFGYDSIVNEDRDIHYPVVEMASRSKLSSVCWNRYIKSQIASSNFEGVVQVWDVTRSQVVTEMGEHERRVWSIDFSSADPTILASGSDDGSVKLWSINQAILFLHLVDVSFETKRTTGSSIGTIRTKANVCCVQFPADSGRSLAFGSADHKIYYYDMRNIRVPLCTFTGHNKTVSYVKYIDSSTLVSASTDNTLKLWDLSMCTSRVIDSPVLSFTGHMNIKVFIYHKAFPMPALSYKFQMDPLTSHEMDDSAQFISSVCWRGQSSSLVAANSTGHIKILEMV 873
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4281224 4287806 - Cp4.1LG06g06870.1 Cpe06g00688 471468

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00688 873 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 654 689 - -
Cpe06g00688 873 PANTHER PROTEIN SPA1-RELATED 2 326 873 IPR044630 GO:0009640
Cpe06g00688 873 ProSiteProfiles Trp-Asp (WD) repeats profile. 758 791 IPR001680 GO:0005515
Cpe06g00688 873 ProSiteProfiles Trp-Asp (WD) repeats profile. 654 689 IPR001680 GO:0005515
Cpe06g00688 873 Coils Coil 334 354 - -
Cpe06g00688 873 Gene3D - 540 873 IPR015943 GO:0005515
Cpe06g00688 873 ProSiteProfiles Protein kinase domain profile. 1 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe06g00688 873 PANTHER PROTEIN SPA1-RELATED 3 8 284 - -
Cpe06g00688 873 SUPERFAMILY Protein kinase-like (PK-like) 40 284 IPR011009 -
Cpe06g00688 873 Gene3D Transferase(Phosphotransferase) domain 1 38 295 - -
Cpe06g00688 873 PANTHER PROTEIN SPA1-RELATED 2 8 284 IPR044630 GO:0009640
Cpe06g00688 873 MobiDBLite consensus disorder prediction 314 336 - -
Cpe06g00688 873 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 758 791 - -
Cpe06g00688 873 SUPERFAMILY WD40 repeat-like 565 869 IPR036322 GO:0005515
Cpe06g00688 873 ProSitePatterns Trp-Asp (WD) repeats signature. 776 790 IPR019775 -
Cpe06g00688 873 PRINTS G protein beta WD-40 repeat signature 776 790 IPR020472 -
Cpe06g00688 873 PRINTS G protein beta WD-40 repeat signature 674 688 IPR020472 -
Cpe06g00688 873 PRINTS G protein beta WD-40 repeat signature 631 645 IPR020472 -
Cpe06g00688 873 PANTHER PROTEIN SPA1-RELATED 3 326 873 - -
Cpe06g00688 873 SMART WD40_4 832 871 IPR001680 GO:0005515
Cpe06g00688 873 SMART WD40_4 559 594 IPR001680 GO:0005515
Cpe06g00688 873 SMART WD40_4 708 747 IPR001680 GO:0005515
Cpe06g00688 873 SMART WD40_4 647 687 IPR001680 GO:0005515
Cpe06g00688 873 SMART WD40_4 751 789 IPR001680 GO:0005515
Cpe06g00688 873 SMART WD40_4 605 644 IPR001680 GO:0005515
Cpe06g00688 873 Pfam WD domain, G-beta repeat 652 687 IPR001680 GO:0005515
Cpe06g00688 873 Pfam WD domain, G-beta repeat 754 789 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00688 - - - mcha:111010399 1396.72
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe02g00702 Cpe06g00688 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00378 Cpe-Chr5:2139864 Cpe06g00688 Cpe-Chr6:4281224 2.65E-148 dispersed
Cpe06g00688 Cpe-Chr6:4281224 Cpe13g00119 Cpe-Chr13:841312 9.17E-163 dispersed
Cpe02g00702 Cpe-Chr2:4434128 Cpe06g00688 Cpe-Chr6:4281224 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g218 . . . Bda09g00507 . . . Bma13g00954 . . . Cma09g00865 . . . Cpe06g00688 Cpe02g00702 Bhi09g03428 Tan01g4394 . . . Mch11g1069 . Cla11g01762 Cam11g1829 Cec11g1849 Cco11g1856 Clacu11g1989 Cmu11g1798 Cre11g2206 . . . . . Csa04g02344 Chy07g00076 . . . . . Bpe11g00483 . . Bma14g00239 . . Cmo09g00854 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003437 3 3 1 2 3 0 2 1 0 1 1 1 2 1 1 2 0 2 2 1 1 1 1 1 1 1 1 3 2 4 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00688 Cpe_Chr06 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0