Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00695 ATGGAACAAAACCATTCCGTGCATGAGTCTGGACATGATGTCTCTCTCAAGCAAAACTGGAGATCCGTCTCAGAAGATGCTAATGGTTGTTTCGAATGCAACATTTGCTTAGACTCAGCCGATGATCCTGTTGTCACCCTCTGTGGTCACCTCTACTGCTGGCCGTGCATTTACATATGGCTTCACGTTCAAATCTCCAGCGATGAACCCGAAAACACCCAGAACTGCCCTGTTTGTAAGGCTAGCATCACTCCCTCTTCTTTGGTTCCCCTCTATGGTCGTGGCACGTCGAACTCAGATTCCGAATCCAAGAAGTCTCACTTGGGTATGGCTGTACCTCGAAGACCACCACCGTCGATGAACGCACCGCCCCATTCCAATGCTGCCTCTGCATTGCATCCTAGCCAGCAGCTTCATCCAAATTATATTCGCTCGCCCTCACACCCACACCCGCACCAGCACCCAATCTATCACCAACAATACTTCCCCCAGGCTTATAGCGACGTTGCTTCATATGCACCTTCTTATCTCGGTAATGCCGTGATAACAAGTCTGCTAAACCCGACGATCGGGATGTTCGGAGAAACAGTTTTCACTAGAATTTTCGGTAGCGTGGATGGGAACTTGTTGCCATACCCGACTTACAACAACTCGATCACAGGGAATGGCAGTAGCAGAATGAGAAGACAGGAAATGCAGCTTGATAAGTCTCTTAATAGAGTCTCCATCTTTCTATTTTGCTGCTTTATTATCTGTCTTCTATTGTTTTGA 771 47.6 MEQNHSVHESGHDVSLKQNWRSVSEDANGCFECNICLDSADDPVVTLCGHLYCWPCIYIWLHVQISSDEPENTQNCPVCKASITPSSLVPLYGRGTSNSDSESKKSHLGMAVPRRPPPSMNAPPHSNAASALHPSQQLHPNYIRSPSHPHPHQHPIYHQQYFPQAYSDVASYAPSYLGNAVITSLLNPTIGMFGETVFTRIFGSVDGNLLPYPTYNNSITGNGSSRMRRQEMQLDKSLNRVSIFLFCCFIICLLLF 256
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4327532 4328302 + Cp4.1LG06g06950.1 Cpe06g00695 471475

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00695 256 MobiDBLite consensus disorder prediction 90 133 - -
Cpe06g00695 256 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA3-LIKE 4 256 - -
Cpe06g00695 256 Pfam RING-type zinc-finger 33 77 IPR027370 -
Cpe06g00695 256 MobiDBLite consensus disorder prediction 90 105 - -
Cpe06g00695 256 SUPERFAMILY RING/U-box 25 92 - -
Cpe06g00695 256 SMART ring_2 33 79 IPR001841 -
Cpe06g00695 256 ProSitePatterns Zinc finger RING-type signature. 48 57 IPR017907 -
Cpe06g00695 256 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 4 256 IPR045103 GO:0005783|GO:0006511|GO:0061630
Cpe06g00695 256 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 107 IPR013083 -
Cpe06g00695 256 ProSiteProfiles Zinc finger RING-type profile. 33 80 IPR001841 -
Cpe06g00695 256 CDD RING-HC_AtRMA_like 31 81 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00695 K10666 RNF5; E3 ubiquitin-protein ligase RNF5 [EC:2.3.2.27] - csv:101206686 396.741
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe02g00705 Cpe06g00695 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00774 Cpe-Chr4:7410794 Cpe06g00695 Cpe-Chr6:4327532 2.99E-56 dispersed
Cpe06g00695 Cpe-Chr6:4327532 Cpe10g00196 Cpe-Chr10:1149309 1.36E-54 dispersed
Cpe02g00705 Cpe-Chr2:4450697 Cpe06g00695 Cpe-Chr6:4327532 1.92E-149 wgd
Cpe20g00430 Cpe-Chr20:2466721 Cpe06g00695 Cpe-Chr6:4327532 1.63E-53 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g241 . . Bda07g00293 . . Bpe02g01905 Bma10g00503 . . . . Cma09g00872 Car01g01030 Car09g00785 Sed06g0407 Cpe06g00695 Cpe02g00705 Bhi09g03405 Tan01g4405 Cmetu07g2305 . Hepe01g1379 Mch11g1077 . Cla11g01769 . . Cco11g1863 . . Cre11g2213 Cone3ag1414 Cone10ag1343 . Cone12ag1456 Lsi04g01328 Csa04g02351 Chy07g00084 . . . . . Bpe11g00486 Bpe03g00833 . Bma14g00232 . Cmo01g01258 Cmo09g00861 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011682 1 1 0 2 2 0 2 1 0 0 1 0 0 1 1 2 0 3 2 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00695 Cpe_Chr06 FPKM 496.894592 515.871399 246.558701 240.45105 386.451111 426.936432 389.722046 239.275421 244.10228 226.005997