Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00706 ATGGATCCTCGCACCCGTCTGGATCATGCTCTGTTTCAGCTCACTCCGACCAGAACCAGATGTGATCTGGTTATCTCCGGCATTGGAGGTGCGACTGAGAAACTGGCATCTGGGCTTCTTCAGCCGTTTATCTCCCACCTCAAATGTGCTAAGGATCAGATTTCCAAGGGGGGTTATTCCATTACTCTTCGCCCTGTTGCAGGATCAAACGCTTCTTGGTTCACTAAGGGCACTCTTCAGAGATTTGTGAGATTTGTTAGCACGCCTGAAGTTCTTGAGAGATTTGTTACTACAGAGAAGGAGATTGTGCAGATTGAGAGTTCTATGTCCACAGATGCACAAGGTAATGTGAAGGGCGATTCGGATGAATATAACGACGATGCTGCCTCGAAGGAGAATCCCAAGGTCTGCCTTCAGCGTGTTCTAGAGACTCGAAAAGCAGTGCTGCACAAAGAGCAAGCAATGGCTTATGCCCGTGCTTTAGTCACAGGATATGAGCTGGATCATATTGATGATCTTATATCTTTTGCTGATGCTTTTGGAGCTTCACGTTTGAGGGAAGCATGTATAAACTTTATGGACTTATGCAAGCAAAAGAATGAAGATAAACACTGGATAGACGAAATAGCAGCTATGCAGGCATTCTCCCAGCCAGCATTTCCTTACTCGGAAACTTCCGGTATCGTACTAGCCGGTGAAGACAACGAAACTAACATCAATGCTCAAGCACCAAGATCGGATTCGACTGCAAGTCAAGGAAGTTTGGATAACAATCAAGACGGTAGCCTTCCAAAATCAGCGCAAATGCCATCGTTGAATGGGAAAGCTCAAATGCCAATGGGATGGCCGAATCATCTTCCTCAGTATATGCACAACTTTCATGGTCCATATCAAGGATATCTCTTGCCCGGAATGCAGATGCCACCACCATATTACCCAGGGAATATGCAGTGGCGATCAAATGCCGATGACTCGAGTCTTGTTTTTGATCGAGAACCGAATGGTCGTAGGAGTTCTAAATCTCATAAGAACAAGAAGAAACTTTCACATAAGGAGGTTCCCAAAACTTCAGAACAAGAAGGAACTACTGAGTCCAGTGAATCCAGTGTTGACAGTGAATCAGATGAACACTCCGATGACGAGAAGATACGTAAGAAACGGCATGGAAAGAAGTCCTCACGAACGGTTGTTATTCGAAATATCAATTACATAACCTCAAAGAAGAATGGTGAAAAGGGCAGCCACTCAGAGGATGATTCATCTGATGAGGGTGAGTTTATTGATGGGGATTCCATCAAACAGCAGGTAGAGGACGCGGTCGGGACGTTGGAGAGAAGACATAAACCAACGAGTCGACGCCAAAAGAAACAGAATGGCTATGGCAATGCTGATGACTTAAATGATTCTGCAGGACAGGAGACTAACCGGGTGTCGAACAATTCCGAGGGAGAAAAGATCAGTAGCCCATGGGATGCTTTCCAGAGTCTTATTATGCGAGAAAACGAGCCCGATAACTCGGACAAACTGCCCTCGATTCAGAATCAAGACATCCATTTTACAGAATCAGAGAAAGCACCAAGACAGCGTGATGTTTCAAGTGATTCTTTCATCATGACAGACAGGAACTCAGCTAATGAAGGAAGAACACATATTGAAAACTTTGAAGCTGGTGATGTTGTTGCCAACCCAATTAACAGGAGAGAAAGCACATATGAAGAGCTATTATTTTCACAAAGAGGCGGAGAATCGAGGAACGATGCACATTCCATGACGTCCGATCTTACCAACATGTCTTCGAGAATGAAAAATCAAAGAGATGGTGATTGGTTTGTCAGCAATCCAGCTGATAAATCCAACAATCAGTATCACAACATCGGTCCCGGAGTTTACGACACCGACTTCTCTTCATCAGCTCAAGAACATCTCTATGCAGAGAAACACAAAATAGATGTTTTGGCTGATGACTCTTTCATGATTCAGTCTCGACCATTAGTAGACAACCAATCCAACTTTCAATCGAGACGAGACATAAGCATGGTATCGGACATTATTGGGGATGCCGAACAAGAAACCTCACGAGATGATAAGCCTGCAACTTTTGGTGTCAATGAACCAGATGACCTTTACATGATGCTCGATCGAGACATAGCTATAGAGCAGACCGTAGCATCTTGGACACCTGAAATGGACTATGAAAATAACTTTTCGACCATAGCCAATGGTAAACACAATGATATTGGACCCGACCGCGTTGACGATCACGAGTCACCTGGTTTGGAAAAGAGCAACAAAAACAAAGAATCTGGTAGCAAAGTTTCAAGTAAAGAAACAAGATCCAAAGGTTTGGGAGGATCTCTTGTTCAATCAAGAACAAGAAAACCAGTTTCTGGTAGCAGAACTATAGTTCATAAGAGCAAATTCGAGAAGGAAGAAGAGACGAGAAAGAGACTGGAAGAATTGGCGATTCAGCGACAGAAAAGAATCGCTGACCGGAGCGCGTCGAGTAAATTTGGTAGTGTGAGTTCTAAGCCTGGTGTGTCTAAGATTGAGAAGCCAAAAAGCCAATCCCTGGTTCAAGAAGATAAGAAGTCACCTAAGCCTGTACTTAGGAGTTCGACCATAGATCGCCTTGCAATGGCTCGTACACCTCAGAAGTTGTCTGCAACTCGATCGCCATCAGGTCAACAAAAAAAGACGATCTCATCAGGAAAGCTCCCGAAAACCGACAGTAAGAACCTTATCTCGAACAAAGTAAAACCTTCCAATTTAAAAAACGGGCACAAGAAATTGAGTAAGGCACTTTCTTCTGATTCTTATGGTCAGACAACAACGGATGGCAAGAACGACGAAGCAGCATTGCCAGCTGAGTCGACGATACCGATACCAAATGCAACTCAACCGATCGACAATGTCGATGACGATATGGAAGATGTTAAGGAGCTACACACTACCCATTCAGTGGAGAAAAATGATGAAACTTTTCTTAGTAATTCAAACGACAAGGTTTTGTCTGTGCCAATTGAAGAACATACTGATTTAGTGGTGTTGTCCAATAAAGCCTTAGACCCTTCAGCTATGAACACCAGAGAAAATGGTGTAGCTGATCATATTGCAGCCACACCCGAGACTTCTGAGATCGAGATTGAAACCTCGACTCCTCCTCCCTCGACGAACGACATGATCTCGGAGTATACGACACACTCGAGGAAGAAATGGATGAGTGATGAAAACTCTCCCAAAGCACCTAAAGGGTTCAGAAAGCTACTCTTTTTCGGACGTAAAACCCGAAACACGTCCATGGATTGA 3306 44.01 MDPRTRLDHALFQLTPTRTRCDLVISGIGGATEKLASGLLQPFISHLKCAKDQISKGGYSITLRPVAGSNASWFTKGTLQRFVRFVSTPEVLERFVTTEKEIVQIESSMSTDAQGNVKGDSDEYNDDAASKENPKVCLQRVLETRKAVLHKEQAMAYARALVTGYELDHIDDLISFADAFGASRLREACINFMDLCKQKNEDKHWIDEIAAMQAFSQPAFPYSETSGIVLAGEDNETNINAQAPRSDSTASQGSLDNNQDGSLPKSAQMPSLNGKAQMPMGWPNHLPQYMHNFHGPYQGYLLPGMQMPPPYYPGNMQWRSNADDSSLVFDREPNGRRSSKSHKNKKKLSHKEVPKTSEQEGTTESSESSVDSESDEHSDDEKIRKKRHGKKSSRTVVIRNINYITSKKNGEKGSHSEDDSSDEGEFIDGDSIKQQVEDAVGTLERRHKPTSRRQKKQNGYGNADDLNDSAGQETNRVSNNSEGEKISSPWDAFQSLIMRENEPDNSDKLPSIQNQDIHFTESEKAPRQRDVSSDSFIMTDRNSANEGRTHIENFEAGDVVANPINRRESTYEELLFSQRGGESRNDAHSMTSDLTNMSSRMKNQRDGDWFVSNPADKSNNQYHNIGPGVYDTDFSSSAQEHLYAEKHKIDVLADDSFMIQSRPLVDNQSNFQSRRDISMVSDIIGDAEQETSRDDKPATFGVNEPDDLYMMLDRDIAIEQTVASWTPEMDYENNFSTIANGKHNDIGPDRVDDHESPGLEKSNKNKESGSKVSSKETRSKGLGGSLVQSRTRKPVSGSRTIVHKSKFEKEEETRKRLEELAIQRQKRIADRSASSKFGSVSSKPGVSKIEKPKSQSLVQEDKKSPKPVLRSSTIDRLAMARTPQKLSATRSPSGQQKKTISSGKLPKTDSKNLISNKVKPSNLKNGHKKLSKALSSDSYGQTTTDGKNDEAALPAESTIPIPNATQPIDNVDDDMEDVKELHTTHSVEKNDETFLSNSNDKVLSVPIEEHTDLVVLSNKALDPSAMNTRENGVADHIAATPETSEIEIETSTPPPSTNDMISEYTTHSRKKWMSDENSPKAPKGFRKLLFFGRKTRNTSMD 1101
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4386889 4393003 - Cp4.1LG06g07170.1 Cpe06g00706 471486

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00706 1101 MobiDBLite consensus disorder prediction 775 798 - -
Cpe06g00706 1101 PANTHER COP1-INTERACTING PROTEIN-RELATED 1 1094 - -
Cpe06g00706 1101 MobiDBLite consensus disorder prediction 745 774 - -
Cpe06g00706 1101 MobiDBLite consensus disorder prediction 326 537 - -
Cpe06g00706 1101 MobiDBLite consensus disorder prediction 370 386 - -
Cpe06g00706 1101 MobiDBLite consensus disorder prediction 395 409 - -
Cpe06g00706 1101 MobiDBLite consensus disorder prediction 1044 1062 - -
Cpe06g00706 1101 MobiDBLite consensus disorder prediction 854 869 - -
Cpe06g00706 1101 MobiDBLite consensus disorder prediction 832 853 - -
Cpe06g00706 1101 MobiDBLite consensus disorder prediction 1067 1082 - -
Cpe06g00706 1101 MobiDBLite consensus disorder prediction 108 129 - -
Cpe06g00706 1101 PANTHER COP1-INTERACTING PROTEIN 7 1 1094 - -
Cpe06g00706 1101 MobiDBLite consensus disorder prediction 928 948 - -
Cpe06g00706 1101 MobiDBLite consensus disorder prediction 1041 1062 - -
Cpe06g00706 1101 MobiDBLite consensus disorder prediction 1067 1086 - -
Cpe06g00706 1101 MobiDBLite consensus disorder prediction 239 273 - -
Cpe06g00706 1101 MobiDBLite consensus disorder prediction 736 969 - -
Cpe06g00706 1101 MobiDBLite consensus disorder prediction 884 921 - -
Cpe06g00706 1101 MobiDBLite consensus disorder prediction 410 432 - -
Cpe06g00706 1101 MobiDBLite consensus disorder prediction 239 279 - -
Cpe06g00706 1101 MobiDBLite consensus disorder prediction 802 831 - -
Cpe06g00706 1101 MobiDBLite consensus disorder prediction 455 488 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00706 - - - mcha:111010382 1540.4
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe02g00714 Cpe06g00706 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00706 Cpe-Chr6:4386889 Cpe12g00133 Cpe-Chr12:836048 2.57E-85 dispersed
Cpe02g00714 Cpe-Chr2:4513077 Cpe06g00706 Cpe-Chr6:4386889 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g264 . Blo03g01535 . Bda09g00491 . Bpe08g01035 . . . . Cma01g01195 Cma09g00882 Car01g01020 Car09g00800 Sed04g3168 Cpe06g00706 Cpe02g00714 Bhi09g03391 Tan01g4426 Cmetu07g0553 . Hepe01g1368 Mch11g1091 . Cla11g01780 Cam11g1844 Cec11g1865 Cco11g1875 Clacu11g2006 Cmu11g1815 Cre11g2223 Cone6ag0128 Cone9ag0152 . . . Csa04g02365 Chy07g00094 . . . . . . . Bma07g01191 . . Cmo01g01249 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003665 1 3 1 1 1 0 2 1 0 1 1 1 2 1 2 2 0 2 2 1 1 2 1 1 1 1 1 4 3 2 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00706 Cpe_Chr06 FPKM 21.08218 22.924482 24.318514 28.44672 9.732486 9.417247 10.351411 33.303318 33.113895 33.213547